Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5764 120 7e-22 seq2242 120 7e-22 seq1335 120 7e-22 seq1327 120 7e-22 seq2707 86.0 1e-11 >seq5764 Length=2049 Score = 120 bits (132), Expect = 7e-22 Identities = 354/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 1985 GTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 1926 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| | || ||| Sbjct 1925 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAGC 1868 Query 157377 AG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 | ||||| || |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 1867 CGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGC 1808 Query 157436 ACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTC 157494 || || ||||| | || | || || || | ||| | | | || |||| | || || || Sbjct 1807 ACCGGCAGCGC-GTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATGATCTC 1749 Query 157495 ATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAA 157549 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| ||| Sbjct 1748 CAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAA 1689 Query 157550 G-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTT 157608 | ||||| || || || ||||| | | ||| || ||| ||||| ||| ||| Sbjct 1688 GTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGG 1632 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 | | | ||||||||||||||| | | |||||||||||||| ||| | ||| Sbjct 1631 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 1572 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCC 157727 |||| || ||||||| |||| |||| || |||| | || | |||| Sbjct 1571 TTCCACCGCGGCAAAGCCGATCAGCCGCTCC-TGA---AAGCTCGCGCCGCTGCCGATCC 1516 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 1515 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 1467 >seq2242 Length=2422 Score = 120 bits (132), Expect = 7e-22 Identities = 354/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 909 GTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 850 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| | || ||| Sbjct 849 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAGC 792 Query 157377 AG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 | ||||| || |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 791 CGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGC 732 Query 157436 ACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTC 157494 || || ||||| | || | || || || | ||| | | | || |||| | || || || Sbjct 731 ACCGGCAGCGC-GTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATGATCTC 673 Query 157495 ATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAA 157549 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| ||| Sbjct 672 CAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAA 613 Query 157550 G-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTT 157608 | ||||| || || || ||||| | | ||| || ||| ||||| ||| ||| Sbjct 612 GTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGG 556 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 | | | ||||||||||||||| | | |||||||||||||| ||| | ||| Sbjct 555 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 496 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCC 157727 |||| || ||||||| |||| |||| || |||| | || | |||| Sbjct 495 TTCCACCGCGGCAAAGCCGATCAGCCGCTCC-TGA---AAGCTCGCGCCGCTGCCGATCC 440 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 439 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 391 >seq1335 Length=2956 Score = 120 bits (132), Expect = 7e-22 Identities = 354/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 2048 GTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 2107 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| | || ||| Sbjct 2108 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAGC 2165 Query 157377 AG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 | ||||| || |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 2166 CGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGC 2225 Query 157436 ACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTC 157494 || || ||||| | || | || || || | ||| | | | || |||| | || || || Sbjct 2226 ACCGGCAGCGC-GTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATGATCTC 2284 Query 157495 ATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAA 157549 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| ||| Sbjct 2285 CAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAA 2344 Query 157550 G-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTT 157608 | ||||| || || || ||||| | | ||| || ||| ||||| ||| ||| Sbjct 2345 GTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGG 2401 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 | | | ||||||||||||||| | | |||||||||||||| ||| | ||| Sbjct 2402 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 2461 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCC 157727 |||| || ||||||| |||| |||| || |||| | || | |||| Sbjct 2462 TTCCACCGCGGCAAAGCCGATCAGCCGCTCC-TGA---AAGCTCGCGCCGCTGCCGATCC 2517 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 2518 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 2566 >seq1327 Length=1320 Score = 120 bits (132), Expect = 7e-22 Identities = 354/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 1256 GTACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 1197 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || ||||||| | || ||| Sbjct 1196 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAGCCCCAGC-GACACAAGCAGC 1139 Query 157377 AG-TCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCG 157435 | ||||| || |||| |||||||| | ||| || | || | || ||||| ||| Sbjct 1138 CGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGC 1079 Query 157436 ACGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTC 157494 || || ||||| | || | || || || | ||| | | | || |||| | || || || Sbjct 1078 ACCGGCAGCGC-GTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATGATCTC 1020 Query 157495 ATGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAA 157549 | || | ||| ||||||||| | | ||||| ||| ||||| | || ||| ||| Sbjct 1019 CAGCACGCGCTCGCGCGGCAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAA 960 Query 157550 G-CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTT 157608 | ||||| || || || ||||| | | ||| || ||| ||||| ||| ||| Sbjct 959 GTCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGG 903 Query 157609 GAACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCC 157668 | | | ||||||||||||||| | | |||||||||||||| ||| | ||| Sbjct 902 CATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCC 843 Query 157669 CTCCAGACAGGTGAAGCCGACTAGCCTCTCCGCGAGTGAAGC-GGTTTCGGGGTTCATCC 157727 |||| || ||||||| |||| |||| || |||| | || | |||| Sbjct 842 TTCCACCGCGGCAAAGCCGATCAGCCGCTCC-TGA---AAGCTCGCGCCGCTGCCGATCC 787 Query 157728 ACTTCTCTGCCCAGAGCGCCTTCTTTTCGATGATTGGCATCGTCTGGAT 157776 || | | ||||| ||||||||| | |||| || ||||||||||| Sbjct 786 ACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGAT 738 >seq2707 Length=33446 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/170 (73%), Gaps = 5/170 (3%) Strand=Plus/Plus Query 253995 GGCGACCTT-CCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 ||||| | | || || || || ||||||||||| ||||| || |||||||| || |||| Sbjct 5641 GGCGAACATGCCACACTTCCTCTTCCACGGTCCCCCCGGCACCGGCAAGACAACATCCAT 5700 Query 254054 CCTGGCGCTGGCCC--GAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAG 254111 ||| || |||| | |||| | | |||| | | ||| | ||||||| |||| Sbjct 5701 CCTCGCTGTGGCACACGAACTAT-TCGGGCCCGATTA-CATTCGCAGCCGCGTGCGCGAG 5758 Query 254112 CTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAA 254161 |||||||| || ||||| |||||| | |||| || || || |||||||| Sbjct 5759 CTGAACGCGTCCGACGACCGCGGGATCAACGTGGTGCGAGAAAAGATCAA 5808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073683083780608