Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq2596 91.5 2e-13 seq686 82.4 9e-11 >seq2596 Length=34106 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 || ||||| |||| || || || || |||||||| ||| || | | | || ||| Sbjct 11546 TCTTTGCCGCCCTGCAGGCGTGTACCGAACTGACCATCCTTGCGCAGAAGCGGGACGTTG 11605 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCAC-AGGTTCTGCTCGCC 126326 ||| || |||||||||||||| | ||||||||||| |||| || |||||| || Sbjct 11606 TTGCTGCCAACAAAGTCCTGCGCCATGGCGACAATGGTCT-GCACAAGCGACTGCTCACC 11664 Query 126327 GTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||| | |||| ||| ||||| | ||||||||| |||||| | |||||||| Sbjct 11665 GTGGTGGTAGGCGGAATGCTCCGAGACGTAGCCGGAGAGCTGCACTACCTTGAT 11718 >seq686 Length=5112 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 15050 CCCGAGATTGGCGACAAGTTTTGCTCT-GGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 ||| | ||||| |||||||| ||| | || | || ||| ||||||||| ||| || Sbjct 4225 CCCAACATTGGTGACAAGTTCTGCAGTCGGCACGG-GCAGAAGGGCACGAACGGTATTCA 4283 Query 15109 TTTCCCCCAGGAAGACATGCCCTT-TACCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 |||| ||||||||||||||||| |||||| | ||||| ||| ||| | ||||||| Sbjct 4284 GTTCCGACAGGAAGACATGCCCTTCAACCGCGAC-GGCATCGTGCCGGACCTCATCATCA 4342 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGAC 15195 | || || ||| || || |||||||| Sbjct 4343 ATCCTCACGCCATTCCCTCACGCATGAC 4370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611345717625600