Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4147 114 1e-20 seq5082 86.0 5e-12 >seq4147 Length=10003 Score = 114 bits (126), Expect = 1e-20 Identities = 262/389 (67%), Gaps = 13/389 (3%) Strand=Plus/Minus Query 129990 CATCAAACTCCACATTCCATCCG-CTTCGACTCGTTTCATAAACAAATCGGGTACCCACA 130048 ||||| ||||| | || |||| |||| || || ||||| || | ||||| | ||||| Sbjct 6211 CATCAGCGTCCACTTCCCCTCCGACTTC-ACACGCTTCATGAAGAGGTCGGGAATCCACA 6153 Query 130049 GGGCGTACAACAAATCTCG----CGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGT 130104 | ||||| |||| || || |||| || |||| | || ||||||| ||||| Sbjct 6152 GCGCGTAGAACAGGTCGCGTGCACGCTGGTCG-TCCTTG---CCGGTGTTACGCTTCAGC 6097 Query 130105 TCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTC 130164 || || || | ||||||||||||||||| |||| ||| | || | || || || Sbjct 6096 AGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTG 6037 Query 130165 CGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCC 130221 || || ||| || ||||| |||| ||| ||| |||||| |||| |||| ||| | Sbjct 6036 CGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGT 5977 Query 130222 TCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTA 130281 |||| || || | |||||| || |||| | ||| | ||||| | |||| ||| Sbjct 5976 ACCAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGAATGTTG 5917 Query 130282 TGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTT 130341 || || | ||| ||||||||| || || || | || || || || || Sbjct 5916 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 5857 Query 130342 TCATAAATGCCAACGATACTGTCTTCTTT 130370 || || || ||| | ||||||||||| || Sbjct 5856 TCGTAGATACCATCAATACTGTCTTCCTT 5828 >seq5082 Length=27471 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| || | || || ||||| | | | Sbjct 27470 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 27411 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || || ||||||||||| || || || || || Sbjct 27410 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 27351 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| |||||| || | || |||||| Sbjct 27350 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 27291 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | || | || |||| ||||||| || Sbjct 27290 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 27244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419697020925640