Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5764 118 2e-21 seq2242 118 2e-21 seq1335 118 2e-21 seq1327 118 2e-21 seq2596 96.9 7e-15 >seq5764 Length=2049 Score = 118 bits (130), Expect = 2e-21 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 1966 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 1907 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 1906 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCGATG 1847 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || ||||| Sbjct 1846 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATA 1787 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 1786 AACTCACGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 1727 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 1726 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 1669 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||| | ||||||| | || | || ||| ||||||| ||| || ||| | || Sbjct 1668 CGCGCGAGATCAGCTCGTTG--CTGAACGTCAAGCCCGGCATCAGCCCGCGCTTCTTCAG 1611 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| || || || ||||| Sbjct 1610 CCAGAACAGCGCGCAGAACGACCCCGAGAA 1581 >seq2242 Length=2422 Score = 118 bits (130), Expect = 2e-21 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 890 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 831 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 830 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCGATG 771 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || ||||| Sbjct 770 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATA 711 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 710 AACTCACGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 651 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 650 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 593 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||| | ||||||| | || | || ||| ||||||| ||| || ||| | || Sbjct 592 CGCGCGAGATCAGCTCGTTG--CTGAACGTCAAGCCCGGCATCAGCCCGCGCTTCTTCAG 535 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| || || || ||||| Sbjct 534 CCAGAACAGCGCGCAGAACGACCCCGAGAA 505 >seq1335 Length=2956 Score = 118 bits (130), Expect = 2e-21 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 2067 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 2126 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 2127 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCGATG 2186 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || ||||| Sbjct 2187 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATA 2246 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 2247 AACTCACGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 2306 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 2307 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 2364 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||| | ||||||| | || | || ||| ||||||| ||| || ||| | || Sbjct 2365 CGCGCGAGATCAGCTCGTTG--CTGAACGTCAAGCCCGGCATCAGCCCGCGCTTCTTCAG 2422 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| || || || ||||| Sbjct 2423 CCAGAACAGCGCGCAGAACGACCCCGAGAA 2452 >seq1327 Length=1320 Score = 118 bits (130), Expect = 2e-21 Identities = 264/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 1237 TCGAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 1178 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| | || || | || | | ||||| || || ||||| | Sbjct 1177 ACGTTGTAGTGCTTCTCCAGCCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCGATG 1118 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | ||||||||| |||| || || | || || ||||| Sbjct 1117 TACTGCGACATCAGCTCCGCGTTCATGCCGATCAGCCGCACCGGCAGCGCGTCGCAGATA 1058 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | | |||| Sbjct 1057 AACTCACGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGGCAGC 998 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 997 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 940 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||| | ||||||| | || | || ||| ||||||| ||| || ||| | || Sbjct 939 CGCGCGAGATCAGCTCGTTG--CTGAACGTCAAGCCCGGCATCAGCCCGCGCTTCTTCAG 882 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| || || || ||||| Sbjct 881 CCAGAACAGCGCGCAGAACGACCCCGAGAA 852 >seq2596 Length=34106 Score = 96.9 bits (106), Expect = 7e-15 Identities = 178/259 (69%), Gaps = 14/259 (5%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||| | ||||| ||||| |||| || ||||| || Sbjct 11853 GACTTTGTGGACAAGGAGTTGATTCTCTTCTCCATCGCGGACTGC----GAGCGCAGCAT 11798 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| |||| | |||||| ||||||| ||||| || || ||||| || ||||| Sbjct 11797 TCCGAGCGCCATTGATGGCTTCAAGCCTGGCCAGCGAAAAATACTCTTCTCCTGCTTCAA 11738 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 || ||||| || | || ||||| | ||| | || || || || || || ||| Sbjct 11737 ACGCAACCTTGTCAACTCCATCAAGGTAGTGCAGCTCTCCGGCTACGTCTCGGAGCATTC 11678 Query 218694 TGGCTACCATCACGGTGAGCA---GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||| ||||||||||| | | ||||| ||||||| | |||||| ||||| Sbjct 11677 CGCCTACCACCACGGTGAGCAGTCGCTTGTGCAG---ACCATTGTCGCCATGGCGCAGGA 11621 Query 218751 CTATGTGGGCAGTAACAAC 218769 || ||| ||||| |||||| Sbjct 11620 CTTTGTTGGCAGCAACAAC 11602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027757047573096