Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5764 86.0 1e-11 seq2242 86.0 1e-11 seq1335 86.0 1e-11 seq1327 86.0 1e-11 >seq5764 Length=2049 Score = 86.0 bits (94), Expect = 1e-11 Identities = 267/408 (65%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| || | || || ||| |||||||| | || |||||| ||| || Sbjct 1566 GTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 1625 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| ||| | || || | |||||| | ||| |||||||||||||| ||| Sbjct 1626 CTGATGCCGGGCTTGACGTTCAGC--AACGAGCTGATCTCGCGCGACGAGGGCCTGCACA 1683 Query 243437 AACAGTTCG-GTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACG 243492 | |||| ||| || |||| || | || || ||||||| || ||| Sbjct 1684 CGGACTTCGCGTGC-CTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGC 1742 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | |||||| || || || | | ||| || || || |||||||| | Sbjct 1743 GTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTG 1802 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||||| || ||||||||| | || || ||| ||||||||||| ||||| || Sbjct 1803 CCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCG 1862 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||||| | | | |||| || ||||| |||||| | | | ||||| | | Sbjct 1863 GACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGAC 1922 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || |||||| | || ||||| || || || || ||||||||||| ||| Sbjct 1923 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAG 1970 >seq2242 Length=2422 Score = 86.0 bits (94), Expect = 1e-11 Identities = 267/408 (65%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| || | || || ||| |||||||| | || |||||| ||| || Sbjct 490 GTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 549 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| ||| | || || | |||||| | ||| |||||||||||||| ||| Sbjct 550 CTGATGCCGGGCTTGACGTTCAGC--AACGAGCTGATCTCGCGCGACGAGGGCCTGCACA 607 Query 243437 AACAGTTCG-GTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACG 243492 | |||| ||| || |||| || | || || ||||||| || ||| Sbjct 608 CGGACTTCGCGTGC-CTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGC 666 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | |||||| || || || | | ||| || || || |||||||| | Sbjct 667 GTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTG 726 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||||| || ||||||||| | || || ||| ||||||||||| ||||| || Sbjct 727 CCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCG 786 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||||| | | | |||| || ||||| |||||| | | | ||||| | | Sbjct 787 GACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGAC 846 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || |||||| | || ||||| || || || || ||||||||||| ||| Sbjct 847 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAG 894 >seq1335 Length=2956 Score = 86.0 bits (94), Expect = 1e-11 Identities = 267/408 (65%), Gaps = 9/408 (2%) Strand=Plus/Minus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| || | || || ||| |||||||| | || |||||| ||| || Sbjct 2467 GTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 2408 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| ||| | || || | |||||| | ||| |||||||||||||| ||| Sbjct 2407 CTGATGCCGGGCTTGACGTTCAGC--AACGAGCTGATCTCGCGCGACGAGGGCCTGCACA 2350 Query 243437 AACAGTTCG-GTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACG 243492 | |||| ||| || |||| || | || || ||||||| || ||| Sbjct 2349 CGGACTTCGCGTGC-CTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGC 2291 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | |||||| || || || | | ||| || || || |||||||| | Sbjct 2290 GTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTG 2231 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||||| || ||||||||| | || || ||| ||||||||||| ||||| || Sbjct 2230 CCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCG 2171 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||||| | | | |||| || ||||| |||||| | | | ||||| | | Sbjct 2170 GACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGAC 2111 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || |||||| | || ||||| || || || || ||||||||||| ||| Sbjct 2110 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAG 2063 >seq1327 Length=1320 Score = 86.0 bits (94), Expect = 1e-11 Identities = 267/408 (65%), Gaps = 9/408 (2%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 || ||||| || | || || ||| |||||||| | || |||||| ||| || Sbjct 837 GTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGG 896 Query 243379 GTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACC 243436 ||||||| ||| | || || | |||||| | ||| |||||||||||||| ||| Sbjct 897 CTGATGCCGGGCTTGACGTTCAGC--AACGAGCTGATCTCGCGCGACGAGGGCCTGCACA 954 Query 243437 AACAGTTCG-GTGAGCTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACG 243492 | |||| ||| || |||| || | || || ||||||| || ||| Sbjct 955 CGGACTTCGCGTGC-CTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGC 1013 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | |||||| || || || | | ||| || || || |||||||| | Sbjct 1014 GTGCTGGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTG 1073 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||||| || ||||||||| | || || ||| ||||||||||| ||||| || Sbjct 1074 CCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCG 1133 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 ||||| | | | |||| || ||||| |||||| | | | ||||| | | Sbjct 1134 GACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGAC 1193 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || |||||| | || ||||| || || || || ||||||||||| ||| Sbjct 1194 TTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAG 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102794424783600