Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq4147 150 2e-31 seq5764 114 2e-20 seq2242 114 2e-20 seq1335 114 2e-20 seq1327 114 2e-20 seq3643 82.4 9e-11 >seq4147 Length=10003 Score = 150 bits (166), Expect = 2e-31 Identities = 1068/1700 (63%), Gaps = 57/1700 (3%) Strand=Plus/Minus Query 113588 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 113647 ||||| | || |||||||||| ||||||||||||||| || ||| | || | || Sbjct 7395 GCCTTGGTGCGCAGGTAGTACACACCCGTCTTGAGCCCCGACTCCCACGTGTAGAAGAGC 7336 Query 113648 ATCGAGGACAACTTGG--AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATT 113705 ||||| | | |||| |||| || || || | || || || |||| ||||||| Sbjct 7335 ATCGACGTGAT-TTGGCCAGAG-GTGGGGCTCTGCAAAAACAGATTCAGCGACTGGGATT 7278 Query 113706 GATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCC 113765 | |||||| | | ||||| || ||||| ||||||| | | | ||| |||| Sbjct 7277 GGTCGATGTACTGGCCACGGTCGCGGGCCATGTCAATCAGCTTGCGCTGCGGGATCTCCC 7218 Query 113766 ACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGC 113825 |||| || | |||||| | ||| | || || || ||| | | || | ||||||||| Sbjct 7217 ACACCGTACGGTAGAGCTCCTTCAGGTCGTCCGGAATACCGTCAATCGTCAGGATGGAGC 7158 Query 113826 CACCCGCCTTGACCATGA-GATCC---TTCATATCCTTTGA--CCAGAGACCAATCTTTT 113879 | |||| ||| |||| | | || ||| | ||| || || ||| Sbjct 7157 CG------TTGAAGGTGATGATCTCGTTGCGCATGGTTTCATTCCACAGGCCTCGCTTGA 7104 Query 113880 TGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 113939 |||| ||| ||| || | ||| || || || ||||| || || || | | Sbjct 7103 TGAGGTCCATCACAAGGTACTTGTTCACGACCGGGAACTCGCCGCTCAGCACACGGCGGA 7044 Query 113940 GATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGG 113999 ||||| || | ||| | ||||| |||||||||||||| || | || || | ||||| Sbjct 7043 CGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCATTGTTGCCAAGAATCTGCGAGGTGG 6984 Query 114000 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC--CTTTTCCCTAATGCG 114057 | || |||||||| || || | || || ||| || | ||| | | || | | Sbjct 6983 ACGCAGTGGGCATCGGCGCAACCAGCAGCGAGTTCCGCATACCGACCTGCACCACCTTC- 6925 Query 114058 TTCCTTGAGGGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTGCCACATAT 114110 ||||||||| ||||||||| || | ||| | || | || |||||| | Sbjct 6924 -TCCTTGAGGCTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGT 6867 Query 114111 CAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAA 114170 | || || || || || ||| || || |||| || || ||||| |||||||| Sbjct 6866 CGAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGGGCCCTCCT 6807 Query 114171 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 114230 ||| |||| || |||||| | || || || || ||||| || || | Sbjct 6806 CCTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAAGATCTCCG 6747 Query 114231 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCG 114290 | |||| || |||||| || |||||| || || || ||| || |||||| Sbjct 6746 CGTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAACGCATCCG 6687 Query 114291 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT 114350 | || || || || || | ||| | || || | | |||||| || || |||| Sbjct 6686 CCAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATTGCTGCGGCGCGCCGTCT 6627 Query 114351 CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 114410 | || || || | || | || || || | ||| || || |||| ||| |||| Sbjct 6626 CAACCGGGTAGTAGTTACGGTCAATCACGCGATTCAGGTTGCGTGTGATTTGCTTCGTGA 6567 Query 114411 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 114470 | ||| | || || | ||| |||| || || || | || |||| Sbjct 6566 CGGTGTAGAGCAGCTGGTGGTCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAGGG 6507 Query 114471 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 114530 |||| || || || || ||||| | ||||| || |||||||| | ||| |||| Sbjct 6506 CGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACAATCTCCG 6447 Query 114531 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 114590 | |||| || || | ||| |||||||| | |||||| || || ||||| |||| |||| Sbjct 6446 TGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTAGACTTACTGTTGCACG 6387 Query 114591 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 114650 ||||||||||||| ||| | ||| || ||||| | || |||| ||| || || || Sbjct 6386 CATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAACC 6327 Query 114651 AGACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 114709 | || | | ||| || | | || | || |||||| ||||||| || Sbjct 6326 ACACCTCCTGCGCCT-GAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAACGCTCATAC 6268 Query 114710 AGGGCTTCAAACTCTTCACC--CACGGCCTCTGAGA---GCCCTGGTGCCTTATCTGGGC 114764 || || ||||| || || | | | |||||| | | ||||| || ||| Sbjct 6267 AGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGC----TC-GGGT 6213 Query 114765 AGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGA 114824 | || | ||| | || || || |||||||||||||||||||| || ||||| | Sbjct 6212 CCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATCCACA 6153 Query 114825 GAGCTGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTC 114882 | || |||| || || || || ||| || || | || || | || | Sbjct 6152 GCGCGTAGAACAGGTCGCG--TGCACGCTGGTCGTCCTTGCCGGTGTTACGCTTCAGCAG 6095 Query 114883 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 114942 || ||| | | ||| || ||||||||||| || || ||||| || | | || || || Sbjct 6094 CAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCG 6035 Query 114943 ---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAAT 114999 || ||| |||||| || || | || ||| || || || || ||||| || | Sbjct 6034 CTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTAC 5975 Query 115000 GATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCA 115057 | ||||| || |||||| || || ||| || | | || | | | Sbjct 5974 CAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGAATGTTG 5917 Query 115058 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 115117 || | |||| |||||| || || || ||| ||| || |||||| | || | Sbjct 5916 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 5857 Query 115118 CCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGC---AGCTCGACATT 115174 ||||||| || || || ||| |||| || | ||||||| |||| ||| Sbjct 5856 TCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCT---CATC 5800 Query 115175 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 115234 || ||| | || || ||||||||||||||||| || || ||||| |||| | ||| | Sbjct 5799 TGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCCTTC 5740 Query 115235 GACATCTTATCGTAGGTCTC 115254 |||||| ||||| ||||| Sbjct 5739 GACATCAGCTCGTACGTCTC 5720 >seq5764 Length=2049 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || ||| || || ||||| || || Sbjct 1682 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGGCATCAGCCC 1623 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || |||||||||||||| || ||||| Sbjct 1622 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCTTCCACCGC 1563 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || | | || ||||| ||| | |||| | || | | |||| || ||| Sbjct 1562 GGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCC--GCTGCCGATCCACCGCACCGC 1506 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 1505 CCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 1464 >seq2242 Length=2422 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || ||| || || ||||| || || Sbjct 606 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGGCATCAGCCC 547 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || |||||||||||||| || ||||| Sbjct 546 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCTTCCACCGC 487 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || | | || ||||| ||| | |||| | || | | |||| || ||| Sbjct 486 GGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCC--GCTGCCGATCCACCGCACCGC 430 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 429 CCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 388 >seq1335 Length=2956 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || ||| || || ||||| || || Sbjct 2351 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGGCATCAGCCC 2410 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || |||||||||||||| || ||||| Sbjct 2411 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCTTCCACCGC 2470 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || | | || ||||| ||| | |||| | || | | |||| || ||| Sbjct 2471 GGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCC--GCTGCCGATCCACCGCACCGC 2527 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 2528 CCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 2569 >seq1327 Length=1320 Score = 114 bits (126), Expect = 2e-20 Identities = 160/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || ||| || || ||||| || || Sbjct 953 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAGCCCGGCATCAGCCC 894 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || |||||||||||||| || ||||| Sbjct 893 GCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAGATGCCTTCCACCGC 834 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || || | | || ||||| ||| | |||| | || | | |||| || ||| Sbjct 833 GGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCC--GCTGCCGATCCACCGCACCGC 777 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 776 CCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 735 >seq3643 Length=6671 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 10780 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 10839 |||||||||||||| |||||| || || || ||||| |||||||||||||| ||||| || Sbjct 5753 GATCTTACGATCAATGCGACCCGGACGCAGCAGGGCCTCGTCAAGGATATCCATGCGATT 5694 Query 10840 CGTCGCCGCGATGAC 10854 |||||| ||| || Sbjct 5693 GGTCGCCATGATCAC 5679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597308380332480