Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq4147 163 3e-35 >seq4147 Length=10003 Score = 163 bits (180), Expect = 3e-35 Identities = 494/758 (65%), Gaps = 10/758 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || ||||||||||| |||||||| || || ||| ||| |||||| || || ||||| Sbjct 5759 GCTACCCCGACCCTCTTCAACGCTGGCACGCCGAAGCCGCAGATGAGCTCTTGCTTCCTC 5818 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || |||| ||| || || || | ||| | || ||||| ||||| | Sbjct 5819 GTTGCGTCGAAGGAAGACAGTATTGATGGTATCTACGATACACTGAAGGAGTGTGCCGTC 5878 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || || || | ||| ||| || | || || || | Sbjct 5879 ATCAGCAAGGCTGCCGGCGGCATTGGTTTGCATGTGCACAACATTCGCTCCGCCGGCAGC 5938 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| || |||||||| || || || | || || ||||| || ||||||||| Sbjct 5939 TACATCGCCGGCACGAATGGCACGTCAAATGGTTTGGTACCCATGCTGCGTGTCTTCAAC 5998 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || |||||||||||||||||||| || | | | || ||| | || || || ||| Sbjct 5999 AACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGCAAAGGTGCCTTTGCCGTGTAT 6058 Query 94192 CTCGAGCCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGCGAAAG---AACCACGG 94247 || ||||| |||||||| ||| | || |||| |||| ||| ||| ||| Sbjct 6059 CTTGAGCCGTGGCACGCCGACATCTTCGGGTTTC----TGCTGCTGAAGCGTAACACCGG 6114 Query 94248 CAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTAT 94307 ||| || || | || | ||||| |||||||| || ||| | || ||||| || || Sbjct 6115 CAAGGACGACCAGCGTGCACGCGACCTGTTCTACGCGCTGTGGATTCCCGACCTCTTCAT 6174 Query 94308 GAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGA-ATGTCCCGGAC 94366 ||| || || || | |||| | | | | ||| | | ||||| || | Sbjct 6175 GAAGCGTGTGAAGTCGGAGGGGAAGTGGACGC-TGATGGACCCGAGCACCTGTCCAGGTC 6233 Query 94367 TGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCA 94426 | |||| | || | || || |||||| |||||||| || ||||| Sbjct 6234 TCAGCGACTGCTACGGCGAGGAGTTCGAGCGTCTGTATGAGCGTTACGAGGCGGAGGGCC 6293 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | | || || | || | || ||||| ||| | || ||| | | Sbjct 6294 GCGGTGTGCAGACGATTCAGGCGCAGGAGGTGTGGTTCGCCATCCTCGAGTCGCAGATCG 6353 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||| || ||| | |||| | | |||||| | |||| ||||| |||||| || Sbjct 6354 AGACAGGCGTGCCGTTCATCCTTTACAAGGATGCGTGCAACAGTAAGTCTAACCAGAAGA 6413 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 ||||||| |||||| ||||||| |||||||| |||||||||||||| || || || | Sbjct 6414 ACCTCGGCACCATCAAGTGCTCGAACCTGTGCACGGAGATTGTCGAGTACACCTCGCCAG 6473 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTG 94644 | |||| || ||||| ||||| | ||||||| |||| Sbjct 6474 AGGAGACGGCGGTGTGCAACCTCGCCTCCATCGCCCTG 6511 Score = 127 bits (140), Expect = 2e-24 Identities = 199/285 (70%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| ||||||| || || || |||||||| || ||||| ||||||| ||||||||||| Sbjct 6950 AACTCGCTGCTGGTTGCGCCGATGCCCACTGCGTCCACCTCGCAGATTCTTGGCAACAAT 7009 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||| ||||||||||| ||| | ||| | | || ||||| ||| || ||| Sbjct 7010 GAGTGCTTCGAGCCCTTCACCTCGAACATCTACGTCCGCCGTGTGCTGAGCGGCGAGTTC 7069 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAG 95268 || ||| | |||||| |||| | |||||| | | || ||||| ||| | Sbjct 7070 CCGGTCGTGAACAAGTACCTTGTGATGGACCTCATCAAGCGAGGCCTGTGGAATGAAACC 7129 Query 95269 GTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAG 95328 | ||| | | | | |||||||||| ||| || || || ||||| Sbjct 7130 ATGCGCAACGAGATCATCACCTTCAACGGCTCCATCCTGACGATTGACGGTATTCCGGAC 7189 Query 95329 GACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 ||| | |||| ||||||| || ||||||||||||||||||||| Sbjct 7190 GACCTGAAGGAGCTCTACCGTACGGTGTGGGAGATCCCGCAGCGC 7234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494685749453760