Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq4147 255 6e-63 seq5764 172 5e-38 seq2242 172 5e-38 seq1335 172 5e-38 seq1327 172 5e-38 seq5082 86.0 6e-12 >seq4147 Length=10003 Score = 255 bits (282), Expect = 6e-63 Identities = 589/873 (67%), Gaps = 27/873 (3%) Strand=Plus/Minus Query 153593 CACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGA 153651 || ||| || || || || || || || |||||||| || |||| | |||||| || | Sbjct 6511 CAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGG-TGTACTCGACAA 6453 Query 153652 TCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGAT 153711 |||| | ||| ||||| ||| || ||| ||| | || | ||| || || | | Sbjct 6452 TCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTAGACTTACTGT 6393 Query 153712 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA- 153770 ||||||| || ||| | || ||| |||| |||| ||||||| |||| |||| ||| Sbjct 6392 TGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGG 6333 Query 153771 --AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATC 153828 |||| || |||||||| | | | |||| | ||||||||| |||||| | Sbjct 6332 CGAACCA---CACCTCCTGCGCCTGAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAAC 6276 Query 153829 GCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACA-CTGATGC 153887 |||| ||||| ||||| ||||| ||||||||||||||| ||| || ||||| || | | Sbjct 6275 GCTCATACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGCT-C 6217 Query 153888 GGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACC 153947 || |||||||| |||| | | || | || || || |||||| || || || | | Sbjct 6216 GGGTCCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATC 6157 Query 153948 CAGAGCGCGTACATGAGGTCGCGCGC---CTTGCAATCCTCCGCGCCCATGTTGCGTTTC 154004 || |||||||| | |||||||| || || | || ||| ||| |||| || ||| Sbjct 6156 CACAGCGCGTAGAACAGGTCGCGTGCACGCTGG---TCGTCCTTGCCGGTGTTACGCTTC 6100 Query 154005 AGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCT 154064 || || | | |||||||||||||||| || |||| || ||||| | ||||||| Sbjct 6099 AGCAGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCT 6040 Query 154065 TTACGCTTTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATG 154121 || ||||| ||| ||||| || |||| ||| | | ||||||||||| |||| |||| Sbjct 6039 TTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATG 5980 Query 154122 GGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACT 154181 ||| ||| || ||| ||||| || || ||| | ||||||| || ||| | Sbjct 5979 GGTACCAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGAATG 5920 Query 154182 TGATGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGC 154241 | ||||| | | |||||||||||| | ||| ||| | || || || ||| Sbjct 5919 TTGTGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGT 5860 Query 154242 GTCCTGTAGATGCCGTCGATGCTATCGT-CGCGGACGC--CGAGCAAGAAACACGAACAC 154298 || |||||| || || || || || | | ||||| |||| ||| || || | | Sbjct 5859 GTATCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAG---GAAGCAAGAGCTC 5803 Query 154299 ATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTT 154358 || ||||| | |||| || || |||||||| || | |||||||| || | Sbjct 5802 ATCTGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCC 5743 Query 154359 TGGCTCATCATGCGGTACGTTTCGATGGCG-TCTTCGATATCATCGCCGTGAATGCCGAG 154417 | ||||| |||||| || || ||||| | ||| | ||| |||||||| Sbjct 5742 TTCGACATCAGCTCGTACGTCTCACGCACGTTCTTC-AGGTCACCTAAGTGGATGCCGAG 5684 Query 154418 CGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 |||||||| | | || |||||||| || || Sbjct 5683 GGCGACGCGGAGAAACAACTGCTGCGGGCGCTC 5651 >seq5764 Length=2049 Score = 172 bits (190), Expect = 5e-38 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 1629 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 1688 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 1689 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 1748 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| |||||| | | |||||||||||| Sbjct 1749 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTGCCGGT 1807 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 1808 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGACCG 1867 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 1868 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 1926 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 1927 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 1984 >seq2242 Length=2422 Score = 172 bits (190), Expect = 5e-38 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 553 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 612 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 613 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 672 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| |||||| | | |||||||||||| Sbjct 673 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTGCCGGT 731 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 732 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGACCG 791 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 792 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 850 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 851 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 908 >seq1335 Length=2956 Score = 172 bits (190), Expect = 5e-38 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 2404 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 2345 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 2344 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 2285 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| |||||| | | |||||||||||| Sbjct 2284 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTGCCGGT 2226 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 2225 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGACCG 2166 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 2165 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 2107 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 2106 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 2049 >seq1327 Length=1320 Score = 172 bits (190), Expect = 5e-38 Identities = 256/358 (72%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| ||| ||||||||||||||||| |||| ||||||||||| || |||||||||||| Sbjct 900 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 959 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCT 52600 || |||||||| ||||| ||| | | | | || || || | || | Sbjct 960 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCGTGCTG 1019 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 ||| || || ||| |||||| ||||| |||||| | | |||||||||||| Sbjct 1020 GAG-ATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTATCTGCGACGCGCTGCCGGT 1078 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||||||| || |||| ||||||||||||| || ||||| || Sbjct 1079 GCGGCTGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGACCG 1138 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACG-CTCGCAATCCGTTTGAGTTTA 52779 ||| | ||| ||| |||| | ||| ||| ||||| ||| | || || || || | Sbjct 1139 GCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGC-AGCCCTTCGACTTCA 1197 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| |||||||||| ||||| ||||||||| || |||||||| Sbjct 1198 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 1255 >seq5082 Length=27471 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || |||| Sbjct 27277 GACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCG 27336 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 27337 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 27396 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| ||| ||||||||| | || | ||| || || ||||| || || Sbjct 27397 TTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTC 27456 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 27457 ACGAAGATCTGCATG 27471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496224832936320