Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq4147 167 3e-36 seq5275 84.2 3e-11 seq4740 84.2 3e-11 seq1883 84.2 3e-11 >seq4147 Length=10003 Score = 167 bits (184), Expect = 3e-36 Identities = 1058/1683 (63%), Gaps = 43/1683 (3%) Strand=Plus/Minus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 |||||| | ||| || || |||| |||||| ||||| || | || ||| | ||| | | Sbjct 7396 CGCCTTGGTGCGCAGGTAGTACACACCCGTCTTGAGCCCCGACTCCCACGTGTAGAAGAG 7337 Query 109458 CATTGAAGAGAGTTTGGAAAGTG-TCGGACTCTCCATAAACAAGTTCATCGACTGAGACT 109516 ||| || | || ||||| || | | || |||| || ||||| |||| |||||| || | Sbjct 7336 CATCGACGTGA-TTTGGCCAGAGGTGGGGCTCTGCAAAAACAGATTCAGCGACTGGGATT 7278 Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGA---TACACTTTTGGCTAATTT 109573 | |||||| | | ||||| || |||||||| || | | | || || || | Sbjct 7277 GGTCGATGTACTGGCCACGGTCGCGGGCCATGTCAATCAGCTTGCGCTGCGGG---ATCT 7221 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| || || ||| | | ||| | || || ||||| | | || | | || | Sbjct 7220 CCCACACCGTACGGTAGAGCTCCTTCAGGTCGTCCGGAATACCGTCAATCGTCAGGATGG 7161 Query 109634 AGCCACCAGCCTTCACCATGA-GATCC--TT---CATCTCTTTCGACCAGAGACCGACCT 109687 |||| || | ||| |||| || ||| || ||| || || || Sbjct 7160 AGCCG------TTGAAGGTGATGATCTCGTTGCGCATGGTTTCATTCCACAGGCCTCGCT 7107 Query 109688 TTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTC 109747 | |||| || ||||| | |||||| || || || || || || || | Sbjct 7106 TGATGAGGTCCATCACAAGGTACTTGTTCACGACCGGGAACTCGCCGCTCAGCACACGGC 7047 Query 109748 GGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAG 109807 ||| ||||||||| | ||| |||| ||||| |||||||||||||| || || || | | Sbjct 7046 GGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCATTGTTGCCAAGAATCTGCGAGG 6987 Query 109808 TGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCC 109867 |||| || |||||||| || || | || || ||| || | ||| | | ||| Sbjct 6986 TGGACGCAGTGGGCATCGGCGCAACCAGCAGCGAGTTCCGCATACCGACCTGCACCACCT 6927 Query 109868 GCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATC--CCACAT 109925 ||| | |||||| || | || || || || | | || |||||| Sbjct 6926 TCTCCTTGAGGCTGTCCCAGTCCCAGCGGCCGCTG--TTCGGGCGGGGGTTCTTCCACAT 6869 Query 109926 ATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTC 109985 || ||| || | |||| || || ||||||||| | ||||| | ||||| Sbjct 6868 GTCGAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGGGCCCTC 6809 Query 109986 AACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG 110045 ||| |||| ||| || ||||| | || ||| || || ||||| || || | Sbjct 6808 CTCCTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAAGATCTC 6749 Query 110046 AGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATC 110105 || |||| | | ||| | | | || || |||| | ||||| ||| |||| Sbjct 6748 CGCGTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAACGCATC 6689 Query 110106 CGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGT 110165 ||| || ||||| || || | || | ||| || | ||| || ||| || || || Sbjct 6688 CGCCAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATTGCTGCGGCGCGCCGT 6629 Query 110166 TTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 || || ||||| |||| ||||| || || ||||| || || || | |||||| Sbjct 6628 CTCAACCGGGTAGTAGTTACGGTCAATCACGCGATTCAGGTTGCGTGTGATTTGCTTCGT 6569 Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAG 110285 || | ||| | || || | | | |||||| || || | || || Sbjct 6568 GACGGTGTAGAGCAGCTGGTGGTCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAG 6509 Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 || || || || || |||||||| | ||||| ||| |||||| || | ||| || Sbjct 6508 GGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACAATCTC 6449 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 ||| |||| ||| || | ||| ||| || | ||||||||| || || || |||||| Sbjct 6448 CGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTAGACTTACTGTTGCA 6389 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTT 110465 |||||||| || || ||| | || || || || |||| |||| ||| ||||| Sbjct 6388 CGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAA 6329 Query 110466 CCATACATCGGCGGCGGGGACAGT-TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGT 110524 ||| || || || | | || ||| | || | || ||| ||||||| | Sbjct 6328 CCACACCTCCTGCGCCTGAATCGTCTGCAC-ACCGCGGCCCTCCGCCTCGTAACGCTCAT 6270 Query 110525 ACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT---CGGGAC 110581 ||| ||| || |||| ||||| || ||||| | | | || |||| | Sbjct 6269 ACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACC--TGGACAGGTGCTCGGGTC 6212 Query 110582 AGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACA 110641 | || | ||| || || || || || | ||||||||| ||||| |||||||||| Sbjct 6211 C-ATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATCCACA 6153 Query 110642 TCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT-AGCTCC 110700 ||| |||| ||||| || ||| || || | || ||| | || | ||| | Sbjct 6152 GCGCGTAGAACAGGTCGCGTGCACGCTGGTCGTCCTTGCCGGTGTT-ACGCTTCAGCAGC 6094 Query 110701 AAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG- 110759 | ||| | | ||| || | |||||| || || ||||| || || | || || || || Sbjct 6093 AGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCGC 6034 Query 110760 --ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATA 110817 || || |||||| || ||||| || ||| |||||||| | ||||| || | Sbjct 6033 TTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTACC 5974 Query 110818 ATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCA---CGAATGTCG 110874 | |||| || ||||| || || || | | | ||| ||||||| | Sbjct 5973 AAACCATTTGACGTGCCATTCGTGCCGGCGAT---GTAGCTGCCGGCGGAGCGAATGTTG 5917 Query 110875 TGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTA 110934 || | ||||| |||||| || || || ||| || || |||||||| | |||||| Sbjct 5916 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 5857 Query 110935 CCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 | || ||||||||||| ||| |||| |||| || |||||||| |||||| Sbjct 5856 TCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCTCATCTGC 5797 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGAC 111054 || ||||| || || |||||||| || || || || || |||| | ||| | ||| Sbjct 5796 GGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCCTTCGAC 5737 Query 111055 ATC 111057 ||| Sbjct 5736 ATC 5734 >seq5275 Length=38991 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 3738 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 3797 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 3798 CTGTTGGGAGCA-CTTTT 3814 >seq4740 Length=9729 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 6573 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 6632 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 6633 CTGTTGGGAGCA-CTTTT 6649 >seq1883 Length=11609 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 5799 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 5740 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 5739 CTGTTGGGAGCA-CTTTT 5723 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 6043 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 6102 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 6103 CTGTTGGGAGCA-CTTTT 6119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588931414516800