Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4147 143 3e-29 seq1079 93.3 5e-14 seq5733 82.4 9e-11 seq1883 82.4 9e-11 >seq4147 Length=10003 Score = 143 bits (158), Expect = 3e-29 Identities = 553/856 (65%), Gaps = 21/856 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || |||||||| || || | ||||| || |||||||| || |||||||| | | Sbjct 6513 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACA 6454 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| ||| || | ||| || || || | ||||| |||||| ||| || Sbjct 6453 ATCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTAGACTTACTG 6394 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||||||||||||||| || ||| | ||| || ||||| |||| |||| ||| || Sbjct 6393 TTGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATG 6334 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGT-TG----GCCCGTCCCTCCGCCTCG 106690 || |||||| | | ||| ||| ||| ||| || | || |||||||||||| Sbjct 6333 GCGAACCACACCTCCTGCGCCTG----AAT--CGTCTGCACACCGCGGCCCTCCGCCTCG 6280 Query 106691 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 106750 || || || || |||||||| || |||| ||||||||| || Sbjct 6279 TAACGCTCATACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTG 6220 Query 106751 -TCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || || | | || | ||| | || || || || ||||||||||| ||||| || Sbjct 6219 CTCGGGTC-CATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGG 6161 Query 106810 AATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 106868 ||||||||| | | || || || | | || || || || | || ||| | Sbjct 6160 AATCCACAGCGCGTAGAACAGGTCGCGTGCA-CGCTGGTCGTCCTTGCCGGTGTTACGCT 6102 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | | || ||| | | ||| || |||||||| ||||||||||| || || | | | Sbjct 6101 TCAGCAGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCAC 6042 Query 106929 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 | || || || ||| | || | || ||||| || ||| ||| || || || |||| Sbjct 6041 CTTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCA 5982 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTC 107044 | || | | ||||| ||| ||||| || || || || | || | Sbjct 5981 TGGGTACCAAACCATTTGACGTGCCATTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCGA 5923 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | | || | |||| ||||| || || || ||| ||| ||||||||| | Sbjct 5922 ATGTTGTGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTC 5863 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || | |||||||| | || ||| ||||| || | ||||||||| | | Sbjct 5862 AGTGTATCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCTC 5803 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 |||||||| | || || ||||| ||||||||||| || || ||||| |||| | ||| Sbjct 5802 ATCTGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCC 5743 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 | |||||| ||||| ||||| || | | ||| | ||||||||||| | Sbjct 5742 TTCGACATCAGCTCGTACGTCTCACGCACGTTCTTCAGGTCACCTAAGTGGATGCCGAGG 5683 Query 107285 GCCACACGCATAAACA 107300 || || || | ||||| Sbjct 5682 GCGACGCGGAGAAACA 5667 >seq1079 Length=10310 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 10283 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 10224 Query 136224 CAGGTAGGAGC 136234 | ||||||||| Sbjct 10223 CTGGTAGGAGC 10213 >seq5733 Length=5162 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 5008 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 5067 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 5068 CAGGTAGGAG 5077 >seq1883 Length=11609 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 6224 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 6165 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 6164 CAGGTAGGAG 6155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589936138453440