Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4147 114 1e-20 seq5082 104 2e-17 >seq4147 Length=10003 Score = 114 bits (126), Expect = 1e-20 Identities = 308/469 (66%), Gaps = 14/469 (3%) Strand=Plus/Minus Query 138474 CTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCG 138533 |||||| | ||| | | || || |||| | |||| | || || ||| || || || Sbjct 7108 CTTGATGAGGTCCATCACAAGGTACTTGTTCACGACCGGGAACTCGCCGCTCAGCACACG 7049 Query 138534 ACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGC 138593 || ||||| ||||| |||||| ||||| || | || ||||| || |||||||| | Sbjct 7048 GCGGACGTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCATTGTTGCCAAGAATCTGCGA 6989 Query 138594 CGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA- 138652 |||| ||| || ||||| ||| |||| || || ||||| | |||| || | Sbjct 6988 GGTGGACGCAGTGGGCATCGGCGCAACCAGCAGCGAGTTCCGCATACCGACCTGCACCAC 6929 Query 138653 -TTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTT--------TTGTTCC 138703 ||| |||||||| ||||||||| |||| ||| || |||| Sbjct 6928 CTTC--TCCTTGAGGCTGTCCCAGTCCCAGCGGCCGCT--GTTCGGGCGGGGGTTCTTCC 6873 Query 138704 ACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACAC 138763 |||| ||| | |||| || ||| || ||||| || || | | | | ||||| | Sbjct 6872 ACATGTCGAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGGGC 6813 Query 138764 CAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAA 138823 | ||| | |||| ||| | |||||| | || || |||| || || ||| | Sbjct 6812 CCTCCTCCTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAAGA 6753 Query 138824 TCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACG 138883 ||| | || | | | |||||||||||| | |||||| || |||| |||||| Sbjct 6752 TCTCCGCGTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAACG 6693 Query 138884 CGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATT 138932 | || |||||||| ||||||||||| ||||| || || | ||||| ||| Sbjct 6692 CATCCGCCAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATT 6644 >seq5082 Length=27471 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || || | | Sbjct 27470 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 27411 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 27410 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 27351 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | | | || || ||| Sbjct 27350 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 27291 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| |||| ||||||| || Sbjct 27290 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 27244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449863542751680