Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4147 232 6e-56 seq5764 107 2e-18 seq2242 107 2e-18 seq1335 107 2e-18 seq1327 107 2e-18 >seq4147 Length=10003 Score = 232 bits (256), Expect = 6e-56 Identities = 582/870 (67%), Gaps = 21/870 (2%) Strand=Plus/Minus Query 147456 CACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGA 147514 || |||||| || || || ||||| || |||||||| || |||| | |||||| || | Sbjct 6511 CAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGG-TGTACTCGACAA 6453 Query 147515 TTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGAT 147574 | || | ||||||||| ||| || ||| || | || | ||| || || | | Sbjct 6452 TCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTAGACTTACTGT 6393 Query 147575 TGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA- 147633 ||||||| || ||| | || ||| |||| |||| ||||||| |||| || | ||| Sbjct 6392 TGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGG 6333 Query 147634 --AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACC 147691 |||| || |||||||| | | | |||| | ||||||||| ||||| | Sbjct 6332 CGAACCA---CACCTCCTGCGCCTGAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAAC 6276 Query 147692 GCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGATGC 147750 |||| |||| ||||| ||||| ||||||||||| ||| || || ||||| || | Sbjct 6275 GCTCATACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGCTCG 6216 Query 147751 GGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACC 147810 || | |||||||| |||| | | |||| || || || ||| || || || || | | Sbjct 6215 GGTC-CATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATC 6157 Query 147811 CACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAA 147870 ||||||||||| | || ||||| || || || ||| |||| || |||| Sbjct 6156 CACAGCGCGTAGAACAGGTCGCGTGCACGCTGGTCGTCCTTGCCGGTGTTACGCTTCAGC 6097 Query 147871 TTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTA 147930 || | | |||||||||||||||| || |||| || ||||| | |||||||| Sbjct 6096 AGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTG 6037 Query 147931 CGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGT 147987 ||||| ||| |||||||| || | ||| | ||||||| || || |||| ||||||| Sbjct 6036 CGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGT 5977 Query 147988 TCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG 148047 ||| || | | ||||| || ||| ||| | ||||||| || || | | | Sbjct 5976 ACCAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCCGGCGGAGCGAATGTTG 5917 Query 148048 TGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTC 148107 ||||| | | |||||||||||| | ||| ||| | || || || || ||| Sbjct 5916 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 5857 Query 148108 GTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACATTTG 148166 |||||| || || || ||||| | || |||| ||| | || || || | ||| || Sbjct 5856 TCGTAGATACCATCAATACTGTCTTCCTTCGACG-CAACGAGGAAGCAAGAGCTCATCTG 5798 Query 148167 CGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTTTGA 148224 ||| || |||| || || ||| ||||| || | |||||||| || || || || Sbjct 5797 CGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCCTTCGA 5738 Query 148225 CTCATCATGCGATACGTCTCAATAGCG-TCTTCGATGTCGTCGCCGTGAATGCCCAGCGC 148283 ||||| ||||||||| || ||||| | ||| | ||| ||||| || || Sbjct 5737 --CATCAGCTCGTACGTCTCACGCACGTTCTTC-AGGTCACCTAAGTGGATGCCGAGGGC 5681 Query 148284 GACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||| | | || ||||| || || || Sbjct 5680 GACGCGGAGAAACAACTGCTGCGGGCGCTC 5651 >seq5764 Length=2049 Score = 107 bits (118), Expect = 2e-18 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 1629 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 1688 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 1689 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 1747 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 1748 GGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTAT--CTGCGACGCGCTGCCG 1805 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 1806 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGA 1864 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | || | | || || || || Sbjct 1865 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 1924 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 1925 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 1969 >seq2242 Length=2422 Score = 107 bits (118), Expect = 2e-18 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 553 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 612 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 613 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 671 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 672 GGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTAT--CTGCGACGCGCTGCCG 729 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 730 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGA 788 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | || | | || || || || Sbjct 789 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 848 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 849 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 893 >seq1335 Length=2956 Score = 107 bits (118), Expect = 2e-18 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 2404 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 2345 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 2344 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 2286 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 2285 GGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTAT--CTGCGACGCGCTGCCG 2228 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 2227 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGA 2169 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | || | | || || || || Sbjct 2168 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 2109 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 2108 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 2064 >seq1327 Length=1320 Score = 107 bits (118), Expect = 2e-18 Identities = 235/345 (68%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||||||| |||||||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 900 ATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 959 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 960 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGCCGCGCGAGCGCG-TGCT 1018 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 1019 GGAGATCATCGTGGACGCGGTGAACATCGAGCGTGAGTTTAT--CTGCGACGCGCTGCCG 1076 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || || | || | ||||||||||| || |||| | || || ||||| || ||||| Sbjct 1077 GTGCGGC-TGATCGGCATGAACGCGGAGCTGATGTCGCAGTACATCGAGTTCGTCGCGGA 1135 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTT 47209 || ||| | ||| ||| || | ||| | | || | | || || || || Sbjct 1136 CCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACTT 1195 Query 47210 TATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| ||||||| || || || |||||||| Sbjct 1196 CATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTCGAGAA 1240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476575120532160