Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5082 105 7e-18 seq4147 89.7 5e-13 >seq5082 Length=27471 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||||||| |||||||| ||||| || ||||||||||| | | ||| | Sbjct 27253 AGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGG 27312 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||| || ||||| ||||| || Sbjct 27313 CCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 27372 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | |||||| || ||||| || || | Sbjct 27373 TTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCCAGCGCG 27432 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || || ||||| || ||||| Sbjct 27433 ATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 27470 >seq4147 Length=10003 Score = 89.7 bits (98), Expect = 5e-13 Identities = 234/354 (66%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 7735 GAAGACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATAC 7794 |||||||| || || || || ||| | || ||| || || ||| || ||| Sbjct 5831 GAAGACAGTATTGATGGTATCTACGATACACTGAAGGAGTGTGCCGTCATCAGCAAGGCT 5890 Query 7795 GGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCC 7854 | |||||| || ||| || | || || || | ||| || ||| ||| ||||| | Sbjct 5891 GCCGGCGGCATTGGTTTGCATGTGCACAACATTCGCTCCGCCGGCAGCTACATCGCCGGC 5950 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || || || | | | ||||| | |||||| |||| || ||||| ||| | | || Sbjct 5951 ACGAATGGCACGTCAAATGGTTTGGTACCCATGCTGCGTGTCTTCAACAACACCGCCCGC 6010 Query 7915 CATGTAGACCAGGGGGGA---AAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 | || |||||||| || ||||||||||| ||| |||| | ||| | ||||||||| Sbjct 6011 TACGTGGACCAGGGTGGCGGTAAGCGCAAAGGTGCCTTTGCCGTGTATCTTGAGCCGTGG 6070 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAA 8030 ||||| ||||| | || | || ||| || |||| || || || |||| Sbjct 6071 CACGCCGACATCTTCGGGTTTCTGCTGCTGAAGCGTAACACCGGCAAGGACGACCAGC-G 6129 Query 8031 AGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGT 8084 || ||||| || |||| || ||||| | ||||| || || |||| ||| || Sbjct 6130 TGCACGCGACCTGTTCTACGCGCTGTGGATTCCCGACCTCTTCATGAAGCGTGT 6183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505360141341120