Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4147 127 3e-24 seq1079 93.3 5e-14 seq5733 82.4 1e-10 seq1883 82.4 1e-10 >seq4147 Length=10003 Score = 127 bits (140), Expect = 3e-24 Identities = 520/804 (65%), Gaps = 23/804 (3%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || |||||||| || || | ||||| || |||||||| || |||||||| | | Sbjct 6513 GGCAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACA 6454 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | ||| || | ||| || || || | ||||| |||||| ||| || Sbjct 6453 ATCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTAGACTTACTG 6394 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||||||||||||||| || ||| | ||| || ||||| |||| || | ||| || Sbjct 6393 TTGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATG 6334 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGT-TG----GCCCGTCCCTCCGCCTCG 111463 || ||| || | | ||| ||| ||| ||| || | || |||||||||||| Sbjct 6333 GCGAACCACACCTCCTGCGCCTG----AAT--CGTCTGCACACCGCGGCCCTCCGCCTCG 6280 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 || || || || |||||||| || |||| ||||||||| || Sbjct 6279 TAACGCTCATACAGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTG 6220 Query 111524 -TCTGGACAGAAAAGAGACCA-TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 || || | | || | ||| || || || | || || ||||||||||| ||||| | Sbjct 6219 CTCGGGTC-CATCAGCGTCCACTTCCCCTCCGACTTC-ACACGCTTCATGAAGAGGTCGG 6162 Query 111582 GAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGT 111640 |||||||||| | | || || || | | || || || || | || ||| | Sbjct 6161 GAATCCACAGCGCGTAGAACAGGTCGCGTGCA-CGCTGGTCGTCCTTGCCGGTGTTACGC 6103 Query 111641 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 111700 | | || ||| | | ||| || |||||||| ||||||||||| || || | | Sbjct 6102 TTCAGCAGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCA 6043 Query 111701 CCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 || || || || ||| | || | || ||||| || ||| ||| || || || ||| Sbjct 6042 CCTTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGC 5983 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCT 111816 || || | | ||||| ||| ||||| || || || || | || | Sbjct 5982 ATGGGTACCAAACCATTTGACGTGCCATTCGTGCCGGCGAT-GTAGCTGCCGGCGGAGCG 5924 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | | || | |||| ||||| || || || ||| ||| ||||||||| | Sbjct 5923 AATGTTGTGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTT 5864 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 || || | |||||||| | || ||| ||||| || | ||||||||| | Sbjct 5863 CAGTGTATCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCT 5804 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 ||||||||| | || || ||||| ||||||||||| || || ||||| |||| | ||| Sbjct 5803 CATCTGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACC 5744 Query 111997 TTGGGACATCTTGTCGTATGTCTC 112020 | |||||| ||||| ||||| Sbjct 5743 CTTCGACATCAGCTCGTACGTCTC 5720 >seq1079 Length=10310 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 10283 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 10224 Query 145342 CAGGTAGGAGC 145352 | ||||||||| Sbjct 10223 CTGGTAGGAGC 10213 >seq5733 Length=5162 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 5008 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 5067 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 5068 CAGGTAGGAG 5077 >seq1883 Length=11609 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 6224 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 6165 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 6164 CAGGTAGGAG 6155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627984457977600