Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4147 147 3e-30 seq5764 116 5e-21 seq2242 116 5e-21 seq1335 116 5e-21 seq1327 116 5e-21 seq3643 82.4 9e-11 >seq4147 Length=10003 Score = 147 bits (162), Expect = 3e-30 Identities = 1066/1700 (63%), Gaps = 57/1700 (3%) Strand=Plus/Minus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 ||||| | || |||||||||| ||||||||||||||| || ||| | || | || Sbjct 7395 GCCTTGGTGCGCAGGTAGTACACACCCGTCTTGAGCCCCGACTCCCACGTGTAGAAGAGC 7336 Query 117888 ATTGAGGACAACTTGGAGAG-GGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTG 117946 || || | | |||| || ||| || || | || || || |||| |||||||| Sbjct 7335 ATCGACGTGAT-TTGGCCAGAGGTGGGGCTCTGCAAAAACAGATTCAGCGACTGGGATTG 7277 Query 117947 ATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCA 118006 |||||| | | || || || ||||| ||||||| | | | ||| ||||| Sbjct 7276 GTCGATGTACTGGCCACGGTCGCGGGCCATGTCAATCAGCTTGCGCTGCGGGATCTCCCA 7217 Query 118007 CACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCC 118066 ||| || | |||||| | ||| | || || || ||| | | || | ||||||| || Sbjct 7216 CACCGTACGGTAGAGCTCCTTCAGGTCGTCCGGAATACCGTCAATCGTCAGGATGGAGCC 7157 Query 118067 ACCCGCCTTGACCATGA-GATCC---TTCATATCCTTTGA--CCAGAGACCAATCTTTTT 118120 |||| ||| |||| | | || ||| | ||| || || ||| | Sbjct 7156 G------TTGAAGGTGATGATCTCGTTGCGCATGGTTTCATTCCACAGGCCTCGCTTGAT 7103 Query 118121 GAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAG 118180 ||| ||| ||| || | ||| || || || ||||| || || || | | Sbjct 7102 GAGGTCCATCACAAGGTACTTGTTCACGACCGGGAACTCGCCGCTCAGCACACGGCGGAC 7043 Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||||| || | ||| | ||||| |||||||||||||| || | || || | ||||| Sbjct 7042 GTAGATGTTCGAGGTGAAGGGCTCGAAGCACTCATTGTTGCCAAGAATCTGCGAGGTGGA 6983 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC--CTTTTCCCTAATGCGT 118298 || |||||||| || || | || || ||| || | ||| | | || | | Sbjct 6982 CGCAGTGGGCATCGGCGCAACCAGCAGCGAGTTCCGCATACCGACCTGCACCACCTTC-- 6925 Query 118299 TCCTTGAGAGCGTCCCAGTCGTAGTTGA-GCTTTGTCTCCCC------CTGCCACATATC 118351 |||||||| ||||||||| || | ||| | || | || |||||| || Sbjct 6924 TCCTTGAGGCTGTCCCAGTCCCAGCGGCCGCTGT-TCGGGCGGGGGTTCTTCCACATGTC 6866 Query 118352 AAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 118411 || || || || || ||| ||| || |||| || || || || |||||||| | Sbjct 6865 GAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGGGCCCTCCTC 6806 Query 118412 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGC 118471 || |||| || |||||| | || || || || || || || || || Sbjct 6805 CTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAAGATCTCCGC 6746 Query 118472 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGC 118531 |||| || |||||| || |||||| || || || ||| || ||||||| Sbjct 6745 GTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAACGCATCCGC 6686 Query 118532 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG--GTC 118589 || || || || || | ||| | || || | | |||||| || | | ||| ||| Sbjct 6685 CAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATTG--CTGCGGCGCGCCGTC 6628 Query 118590 TCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 118649 || || || || | || | || || || | ||| || || |||| ||| ||| Sbjct 6627 TCAACCGGGTAGTAGTTACGGTCAATCACGCGATTCAGGTTGCGTGTGATTTGCTTCGTG 6568 Query 118650 ATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 118709 | | ||| | || || | ||| |||| || || || | || ||| Sbjct 6567 ACGGTGTAGAGCAGCTGGTGGTCCACCTCGCGCTTCTCCTCGTTCACGAAGCGCGGCAGG 6508 Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || || || || ||||| | ||||| || |||||||| | ||| ||| Sbjct 6507 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTCGACAATCTCC 6448 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||||| ||| || | ||| |||||||| | |||||| || || ||||| |||| ||| Sbjct 6447 GTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTAGACTTACTGTTGCAC 6388 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 |||||||||||||| ||| | ||| || ||||| | || |||| ||| || || | Sbjct 6387 GCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAAC 6328 Query 118890 CAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAG 118949 || || || || | | || | || ||||| ||||||| || Sbjct 6327 CACACCTCCTGCGCCTGAATCGTCTGCACACCGCGGCCCTCCGCCTCGTAACGCTCATAC 6268 Query 118950 AGGGCTTCAAACTCTTCACC--CACGGCCTCTGAGA---GCCCTGGTGCCTTATCTGGGC 119004 || || ||||| || || | | | |||||| | | ||||| || ||| Sbjct 6267 AGACGCTCGAACTCCTCGCCGTAGCAGTCGCTGAGACCTGGACAGGTGC----TC-GGGT 6213 Query 119005 AGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 119064 | || | ||| | || || || || ||||||||||||||||| || ||||| | Sbjct 6212 CCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGGAATCCACA 6153 Query 119065 GCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTC 119122 |||| |||| || || || || ||| || || | || || | || | Sbjct 6152 GCGCGTAGAACAGGTCGCG--TGCACGCTGGTCGTCCTTGCCGGTGTTACGCTTCAGCAG 6095 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG 119182 || ||| | | ||| || ||||||||||| || || ||||| || | | || || || Sbjct 6094 CAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCACCTTTGCG 6035 Query 119183 ---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 || ||| |||||| || || | || ||| ||| || ||||| ||||| || | Sbjct 6034 CTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCATGGGTAC 5975 Query 119240 GATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCG 119297 | ||||| || |||||| || || ||| || | | || | | | | Sbjct 5974 CAAACCATTTGACGTGCCATTCGTGCCGGCGATGTAGCTGCC--GGCGGAGCGAATGTTG 5917 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 || | |||| |||||| || || || ||| ||| || |||||| | || | Sbjct 5916 TGCACATGCAAACCAATGCCGCCGGCAGCCTTGCTGATGACGGCACACTCCTTCAGTGTA 5857 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGACATT 119414 ||||||| ||||| || ||| |||| || | |||||||| |||| ||| Sbjct 5856 TCGTAGATACCATCAATACTGTCTTCCTTCGACGCAACGAGGAAGCAAGAGCT---CATC 5800 Query 119415 TGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGG 119474 || ||| | || || |||||||||||||| || || || ||||| |||| | ||| | Sbjct 5799 TGCGGCTTCGGCGTGCCAGCGTTGAAGAGGGTCGGGGTAGCGTGCGTGAAGAAACCCTTC 5740 Query 119475 GACATCTTGTCGTAGGTCTC 119494 |||||| ||||| ||||| Sbjct 5739 GACATCAGCTCGTACGTCTC 5720 >seq5764 Length=2049 Score = 116 bits (128), Expect = 5e-21 Identities = 280/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| |||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 1873 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 1814 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 1813 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATG 1754 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 1753 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 1696 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| || Sbjct 1695 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAG 1637 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 1636 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAG 1577 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || || ||||| || || | | || ||||| ||| | || | | || | Sbjct 1576 ATGCCTTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCCGCTG--CCG 1520 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 1519 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 1464 >seq2242 Length=2422 Score = 116 bits (128), Expect = 5e-21 Identities = 280/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| |||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 797 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 738 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 737 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATG 678 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 677 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 620 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| || Sbjct 619 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAG 561 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 560 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAG 501 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || || ||||| || || | | || ||||| ||| | || | | || | Sbjct 500 ATGCCTTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCCGCTG--CCG 444 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 443 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 388 >seq1335 Length=2956 Score = 116 bits (128), Expect = 5e-21 Identities = 280/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Plus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| |||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 2160 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 2219 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 2220 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATG 2279 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 2280 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 2337 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| || Sbjct 2338 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAG 2396 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 2397 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAG 2456 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || || ||||| || || | | || ||||| ||| | || | | || | Sbjct 2457 ATGCCTTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCCGCTG--CCG 2513 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 2514 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 2569 >seq1327 Length=1320 Score = 116 bits (128), Expect = 5e-21 Identities = 280/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 129839 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATG 129898 || || || |||| |||| |||| ||||||| |||||| ||| | |||||| ||||| Sbjct 1144 AGCAGCCGGTCCGCGACGAACTCGATGTACTGCGACATCAGCTCCGCGTTCATGCCGATC 1085 Query 129899 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACG 129958 || || |||||||| |||| ||| | ||| |||| ||| || ||| | | Sbjct 1084 AGCCGCACCGGCAGCGCGTCGCAGATAAACTCACGCTCGATGTTCACCGCGTCCACGATG 1025 Query 129959 ATGGCGTGAATGGTCTC-CGTGCCAGGTCTATTGCGCAAAGTC----TTGAAGAGTTC-C 130012 || | | | | ||| || | ||| || ||| | || ||| | || | Sbjct 1024 ATCTCCAGCACGCGCTCGCGCGGCAG--CTTGTGCTTGATGTGCGAGTTGTACAGCAGGC 967 Query 130013 ACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 130072 ||| | || ||| ||| || |||||||| || ||||| || || || ||| || Sbjct 966 ACG-CGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAACGTCAAG 908 Query 130073 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 130132 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 907 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAACGACCCCGAGAAGAAG 848 Query 130133 ATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA 130192 || || ||||| || || | | || ||||| ||| | || | | || | Sbjct 847 ATGCCTTCCACCGCGGCAAAGCCGATCAGCCGCTCCTGAAA-GCTCGCGCCGCTG--CCG 791 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 | |||| || |||||||| |||||| |||| ||| ||||||| ||||||||||| Sbjct 790 ATCCACCGCACCGCCCACTCCGCCTTCTTCTGGATGCACGGGATCGTCTGGATCGC 735 >seq3643 Length=6671 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 14056 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 14115 |||||||||||||| |||||| || || || ||||| |||||||||||||| ||||| || Sbjct 5753 GATCTTACGATCAATGCGACCCGGACGCAGCAGGGCCTCGTCAAGGATATCCATGCGATT 5694 Query 14116 CGTCGCCGCGATGAC 14130 |||||| ||| || Sbjct 5693 GGTCGCCATGATCAC 5679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618388384455360