Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5764 105 8e-18 seq2242 105 8e-18 seq1335 105 8e-18 seq1327 105 8e-18 >seq5764 Length=2049 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | || |||||| || ||| | | || ||||| || | Sbjct 1419 GACACGTACATCACGGACAGCGCGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 1478 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| ||||| || |||| | | || | |||| | Sbjct 1479 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGG--CAGCGGCGCGAGC- 1535 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||| ||||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 1536 TTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTC 1595 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || | ||| ||||||| Sbjct 1596 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAG 1655 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 1656 CTGATCTCGCGCGACGAGGGCCTGCAC 1682 >seq2242 Length=2422 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | || |||||| || ||| | | || ||||| || | Sbjct 343 GACACGTACATCACGGACAGCGCGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 402 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| ||||| || |||| | | || | |||| | Sbjct 403 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGG--CAGCGGCGCGAGC- 459 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||| ||||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 460 TTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTC 519 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || | ||| ||||||| Sbjct 520 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAG 579 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 580 CTGATCTCGCGCGACGAGGGCCTGCAC 606 >seq1335 Length=2956 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | || |||||| || ||| | | || ||||| || | Sbjct 2614 GACACGTACATCACGGACAGCGCGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 2555 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| ||||| || |||| | | || | |||| | Sbjct 2554 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGG--CAGCGGCGCGAGC- 2498 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||| ||||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 2497 TTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTC 2438 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || | ||| ||||||| Sbjct 2437 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAG 2378 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 2377 CTGATCTCGCGCGACGAGGGCCTGCAC 2351 >seq1327 Length=1320 Score = 105 bits (116), Expect = 8e-18 Identities = 185/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Plus Query 94678 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 94737 |||| ||| || | ||| | || |||||| || ||| | | || ||||| || | Sbjct 690 GACACGTACATCACGGACAGCGCGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATC 749 Query 94738 CCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 94797 ||||| || || ||||| ||||| ||||| || |||| | | || | |||| | Sbjct 750 CCGTGCATCCAGAAGAAGGCGGAGTGGGCGGTGCGGTGGATCGG--CAGCGGCGCGAGC- 806 Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 ||| ||||| || ||| ||||| || || || ||||||||||| || || ||| Sbjct 807 TTTCAGGAGCGGCTGATCGGCTTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTC 866 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| | | ||||| |||||||| || || ||||| || | ||| ||||||| Sbjct 867 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAG 926 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||||| || |||||||| || ||| Sbjct 927 CTGATCTCGCGCGACGAGGGCCTGCAC 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583216647157440