Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4147 253 2e-62 >seq4147 Length=10003 Score = 253 bits (280), Expect = 2e-62 Identities = 529/769 (69%), Gaps = 28/769 (4%) Strand=Plus/Plus Query 53198 CGCGTCGCCTTGGGTATCCAC---GGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||||||| | || |||||| |||||| | | |||| |||||||||||||| Sbjct 5675 CGCGTCGCCCTCGGCATCCACTTAGGTGACCTGAAGAA-CGTG--CGTGAGACGTACGAG 5731 Query 53255 TTAATGAGCCAAAAGTA-CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | ||| | || || ||| |||||||| || || ||||| ||||||||||| ||| Sbjct 5732 CTGATGT-CGAAGGGTTTCTTCACGCACGCTACCCCGACCCTCTTCAACGCTGGCACGCC 5790 Query 53314 TCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | || |||||| |||| ||||||| || ||| |||||| ||| || || || Sbjct 5791 GAAGCCGCAGATG---AGCTCTTGCTTCCTCGTTGCGTCGAAGGAAGACAGTATTGATGG 5847 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 |||||||| || || |||||||||||| |||| |||| | || || || ||| | Sbjct 5848 TATCTACGATACACTGAAGGAGTGTGCCGTCATCAGCAAGGCTGCCGGCGGCATTGGTTT 5907 Query 53431 CCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 || ||| | ||| | || | ||||| ||| || ||||| ||| | Sbjct 5908 GCATGTGCAC-AACATTCGCTCCGCCGGCAGCTACATCGCCGGCACGAATGGCACGTCAA 5966 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 |||| | || || ||||| || |||||||||||||| ||||| ||||| ||||||||| Sbjct 5967 ATGGTTTGGTACCCATGCTGCGTGTCTTCAACAACACCGCCCGCTACGTGGACCAGGGTG 6026 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | || |||||||| || | || ||| | || || |||||||||||||||||||| | | Sbjct 6027 GCGGTAAGCGCAAAGGTGCCTTTGCCGTGTATCTTGAGCCGTGGCACGCCGACATCTTCG 6086 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT- 53667 |||||| |||| | || || | || || ||| ||| || |||||||| Sbjct 6087 GGTTTCTGCTGCTGAAGCGTAACACCGGCAAGGACGACCAGCG-TGCACGCGACCTGTTC 6145 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| || ||||||||||| |||||||||||| | ||| || ||| | | ||||| Sbjct 6146 TAC-GCGCTGTGGATTCCCGACCTCTTCATGAAGCGTGTGAAGTCGGAGGGGAAGTGGAC 6204 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT-CTACGGTGAGGAGTTTAACG 53786 |||||| ||||| | || || || || ||| | | |||||| |||||||| || Sbjct 6205 GCTGATGGACCCGAGCACCTGTCCAGGTCT-CAGCGACTGCTACGGCGAGGAGTT---CG 6260 Query 53787 AG---ATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTG 53843 || ||||| | |||| | |||||||| | ||| | | |||||| | Sbjct 6261 AGCGTCTGTATGAGCGTTACGAGGCGGAGGGCCGCGGTGTGCAGACGATTCAGGCGCAGG 6320 Query 53844 AGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACA 53903 |||| ||| || |||||| || ||| | ||||| || ||||| ||| |||| Sbjct 6321 AGGTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACAGGCGTGCCGTTCATCCTTTACA 6380 Query 53904 AGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 ||||| || |||| ||| |||||||||||| ||||| |||||| Sbjct 6381 AGGATGCGTGCAACAGTAAGTCTAACCAGAAGAACCTCGGCACCATCAA 6429 Score = 122 bits (134), Expect = 1e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 || |||||| | ||||| |||||||||||||| || ||| | |||||||||||| Sbjct 7193 CTGAAGGAGCTCTACCGTACGGTGTGGGAGATCCCGCAGCGCAAGCTGATTGACATGGCC 7252 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGA-ATCC 55845 || ||||| |||||||||||| |||||||| ||||| | || || ||| || Sbjct 7253 CGCGACCGTGGCCAGTACATCGACCAATCCCAGTCGCTGAATCTGTTTTTGCAGAGCCCC 7312 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||||||| | | ||||||| ||| ||| |||| || ||| ||||||||||| Sbjct 7313 ACCTCTGGCCAA-ATCACGTCGATGCTCTTCTACACGTGGGAGTCGGGGCTCAAGACGGG 7371 Query 55906 TATGTACTATCTGCGGACC 55924 | ||||||| ||||| ||| Sbjct 7372 TGTGTACTACCTGCGCACC 7390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547174575748800