Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4147 165 9e-36 seq5082 154 2e-32 seq5764 96.9 4e-15 seq2242 96.9 4e-15 seq1335 96.9 4e-15 seq1327 96.9 4e-15 >seq4147 Length=10003 Score = 165 bits (182), Expect = 9e-36 Identities = 609/940 (65%), Gaps = 23/940 (2%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||||||| || | ||||||| ||| || ||| ||| || ||||| || Sbjct 6874 CCACATGTCGAATTGTAGAATGCCCTGGCTCGCGGGGCTACCCTTGAAGGTTTCGTAGGG 6815 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 ||||||| ||| |||| ||| |||| || | || || || ||| ||| || Sbjct 6814 GCCCTCCTCCTTTGCCATCTCCATCGACGCCTCCACAGCGGCAAAGTAGATGGTCTCGAA 6755 Query 80661 GACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAA 80720 || || |||||| |||||| | | | |||| || | | || ||||| Sbjct 6754 GATCTCCGCGTTCACCTTCTGCGCCTCGGCGCTCACAAACGGCAGACGAAGCAGAATGAA 6695 Query 80721 CACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGC---TTGTTCGATCG 80777 | | || ||||| ||||| ||||| | | ||| || |||| |||| ||| | || Sbjct 6694 CGCATCCGCCAGCCCCTGCACGCCCACGCCGACGGGACGGTTGCGCATATTGCTGCGGCG 6635 Query 80778 CTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC 80837 | | | ||| || ||||| ||||| || || ||||| |||||||||||||| | Sbjct 6634 CGCCGTCTC---AACCGGGTAGTAGTTACGGTCAATCACGCGATTCAGGTTGCGTGTGAT 6578 Query 80838 AACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG---TTCCCCT---TCACAAA 80891 | || || | || ||| ||| | | | ||| ||| |||| || Sbjct 6577 TTGCTTCGTGACGGTGTAGAGCAGCTGGTGGTCCACCTCGCGCTTCTCCTCGTTCACGAA 6518 Query 80892 TGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTC 80951 ||| ||| | ||| || || |||||||| ||| ||| || | || |||| Sbjct 6517 GCGCGGCAGGGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCTGGCGAGGTGTACTC 6458 Query 80952 GACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTT 81011 ||| || |||||||||| || || |||| || || || ||||| |||||||| ||||| Sbjct 6457 GACAATCTCCGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTAGACTT 6398 Query 81012 GGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAG 81071 |||||| || |||||||| ||| |||| || ||||||| ||| |||| ||| Sbjct 6397 ACTGTTGCACGCATCCTTGTAAAGGATGAACGGCACGCCTGTCTCGATCTGCGACTCGAG 6338 Query 81072 GATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTG-CCTTCGGCCACAT 81130 ||||||| ||| | ||| |||||| | | || || | | || || ||| | | Sbjct 6337 GATGGCGAACCACACCTCCTGCGCCTGAATCGTCT-GCACACCGCGGCCCTCCGCCTCGT 6279 Query 81131 ACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTC 81188 | | || || | ||||||| | |||| | ||| | |||| |||| || Sbjct 6278 AACGCTCATACAGACGC-TCGAACTCCTCGCCGTAGCAGT-CGCTGAGACCTGGACAGGT 6221 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 | | ||| |||||| ||| | || || ||| ||||||||| ||| || Sbjct 6220 GCTCGGGTCCATCAGCGTCCACTTCCCCTCCGACTTCACACGCTTCATGAAGAGGTCGGG 6161 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 ||||| || ||| |||||||||||| ||| ||| || || | || ||| | Sbjct 6160 AATCCACAGCGCGTAGAACAGGTCGCGTGCA-CGCTGGTCGTCCTTGCCGGTGTTACGCT 6102 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367 || | ||||| | | |||||| || ||||| ||||| ||||||||||| | | | Sbjct 6101 TCAGCAGCAGAAACCCGAAGATGTCGGCGTGCCACGGCTCAAGATACACGGCAAAGGCAC 6042 Query 81368 CCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 | ||||| || ||||||||||| ||||| ||||| || ||| || ||||||| || Sbjct 6041 CTTTGCGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTGTTGAAGACACGCAGCA 5982 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGAT 81464 | || | | ||||| |||| || ||||| || |||| Sbjct 5981 TGGGTACCAAACCATTTGACGTGCCATTCGTGCCGGCGAT 5942 >seq5082 Length=27471 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 27470 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTGGAGGTGGAGGCGAGC 27411 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 27410 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 27351 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || || ||||| || Sbjct 27350 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 27291 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| ||||| || || || || |||| || ||||||||| Sbjct 27290 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGA 27243 >seq5764 Length=2049 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| |||||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 1557 TTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 1616 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || |||||||| || || |||| |||||||||||||| || |||||||| Sbjct 1617 AAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 1676 Query 64849 CTCCAC 64854 || ||| Sbjct 1677 CTGCAC 1682 >seq2242 Length=2422 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| |||||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 481 TTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 540 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || |||||||| || || |||| |||||||||||||| || |||||||| Sbjct 541 AAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 600 Query 64849 CTCCAC 64854 || ||| Sbjct 601 CTGCAC 606 >seq1335 Length=2956 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| |||||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 2476 TTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 2417 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || |||||||| || || |||| |||||||||||||| || |||||||| Sbjct 2416 AAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 2357 Query 64849 CTCCAC 64854 || ||| Sbjct 2356 CTGCAC 2351 >seq1327 Length=1320 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 |||||| |||||||| || ||||| || ||||| ||||| | | |||||||| || Sbjct 828 TTTGCCGCGGTGGAAGGCATCTTCTTCTCGGGGTCGTTCTGCGCGCTGTTCTGGCTGAAG 887 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| || |||||||| || || |||| |||||||||||||| || |||||||| Sbjct 888 AAGCGCGGGCTGATGCCGGGCTTGACGTTCAGCAACGAGCTGATCTCGCGCGACGAGGGC 947 Query 64849 CTCCAC 64854 || ||| Sbjct 948 CTGCAC 953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570267227502720