Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3710 89.7 4e-13 seq686 84.2 2e-11 >seq3710 Length=2726 Score = 89.7 bits (98), Expect = 4e-13 Identities = 165/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 29646 TCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTC 29705 |||||| ||||||||| ||||||||| || || || |||||||| || | ||| | Sbjct 2002 TCAGCGCCTCCACGTGGGTGCTGTAGACGTGCGCGTCGCCGAGGGTGTGCACCAGCTCAC 1943 Query 29706 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29765 |||| || || || | | || |||| ||| | ||| ||||| ||||||| Sbjct 1942 CCGGACGCAGGCCAGTCGCCTTGGCGATCAAAATCGTCAAGAGCGAGTACGACGCGATGT 1883 Query 29766 TAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC-- 29823 | || ||||| || || |||||||| | ||| | ||| || ||| ||| || || || Sbjct 1882 TGAACGGCACGCCAAGACCCATGTCGCATGAGCGCTGATACAGCATGCAGGACAGTTCCT 1823 Query 29824 ---TCCGTC-GCTCACGTAAAACTGACACATGGCA--TGGCACGGAGGAAGGGCCAT 29874 || || | | ||||||||||||| || ||| ||||| || ||||| ||||| Sbjct 1822 TTGTCTGTGTGTTTACGTAAAACTGAC-CA-AGCAGGTGGCATGGCGGAAGTGCCAT 1768 >seq686 Length=5112 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 53531 ATGGGCGACAAGTT-TGCATCCTTCACGGCGCAAAAGGGGACATGCGGAG--CGGTCCTG 53587 || || |||||||| |||| | ||||| ||| ||||| || ||| | || | | Sbjct 4231 ATTGGTGACAAGTTCTGCAGTCGGCACGG-GCAGAAGGGCACGAACGGTATTCAGTTCCG 4289 Query 53588 ACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCC 53647 || |||| |||||||||||| || ||||| | ||||| |||||||||||||| || Sbjct 4290 AC--AGGAAGACATGCCCTTCAACCGCGACGGCATCGTGCCGGACCTCATCATCAATCCT 4347 Query 53648 CACGCCTTTCCCTCCAGGATGACGGT 53673 |||||| ||||||| | |||||||| Sbjct 4348 CACGCCATTCCCTCACGCATGACGGT 4373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406133222109616