Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20bombi_20[genbank_20GCA_5F002216605.1_202017-07-11] 6,056 sequences; 31,359,519 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5082 176 9e-39 seq1923 95.1 3e-14 seq928 93.3 9e-14 seq5764 91.5 3e-13 seq2242 91.5 3e-13 seq1335 91.5 3e-13 seq1327 91.5 3e-13 >seq5082 Length=27471 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || || || || | |||| || || |||||||||||||| || Sbjct 27244 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 27303 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||||| || || ||||| ||| Sbjct 27304 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 27363 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 27364 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 27423 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 27424 TCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 27470 >seq1923 Length=5031 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 273828 GAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGA 273887 || || ||||||||||| |||| ||| ||| |||||||||| ||| | | | ||| Sbjct 1929 GAGCCGAACTGACCCTCCGGCACGAGCAGGTTAATGTTGTTGCCGCCGGTGAAGTTCTGT 1988 Query 273888 GCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGC 273937 ||||| |||||||| ||| ||||||| || |||||||||||||| |||| Sbjct 1989 GCCATCTTCACGATCGTCTCCTGAAGAGACACCTCGCCGTGGTGGAAGGC 2038 >seq928 Length=993 Score = 93.3 bits (102), Expect = 9e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || ||| | ||||| ||||| || ||||| ||| Sbjct 992 CCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCG 933 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 932 AGCGCGATCGTCTTGCCTGTCAGCGTCTTCACGAAGATCTGCAT 889 >seq5764 Length=2049 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 ||||| || |||||||| | || || || ||||||||||| || || || ||| | Sbjct 1782 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 1841 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| ||| ||||| || Sbjct 1842 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 1901 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | ||||||| || |||||| | || || || ||||| || || |||||| Sbjct 1902 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 1961 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||| ||| || |||| || || ||||| Sbjct 1962 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGC 1993 >seq2242 Length=2422 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 ||||| || |||||||| | || || || ||||||||||| || || || ||| | Sbjct 706 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 765 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| ||| ||||| || Sbjct 766 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 825 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | ||||||| || |||||| | || || || ||||| || || |||||| Sbjct 826 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 885 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||| ||| || |||| || || ||||| Sbjct 886 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGC 917 >seq1335 Length=2956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 ||||| || |||||||| | || || || ||||||||||| || || || ||| | Sbjct 2251 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 2192 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| ||| ||||| || Sbjct 2191 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 2132 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | ||||||| || |||||| | || || || ||||| || || |||||| Sbjct 2131 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 2072 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||| ||| || |||| || || ||||| Sbjct 2071 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGC 2040 >seq1327 Length=1320 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 ||||| || |||||||| | || || || ||||||||||| || || || ||| | Sbjct 1053 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATCGGCATGAACGCGGAGCTGATGTCG 1112 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || ||||| ||||| || || || | | ||| |||| ||| ||||| || Sbjct 1113 CAGTACATCGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGGCTGGAGAAGCACTAC 1172 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | ||||||| || |||||| | || || || ||||| || || |||||| Sbjct 1173 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 1232 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGC 230403 ||||| ||| || |||| || || ||||| Sbjct 1233 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGC 1264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046657980888624