Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq17 123 5e-23 seq92 118 2e-21 seq14 105 1e-17 >seq17 Length=1449266 Score = 123 bits (136), Expect = 5e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||||| || || |||| Sbjct 520285 GAGTTCATCTGCGACGCGTTGCCGGTGCGGCTGATCGGCATGAACGCCGAGCTGATGGCG 520226 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || |||||| | |||| | || |||| |||||| ||| Sbjct 520225 CAGTACATCGAGTTCGTGGCGGACCGCCTGCTTGTGTCGCTCGGTTTGGAGAAACACTAC 520166 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 520165 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACAAACTTC 520106 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || || |||| | | || ||||||| Sbjct 520105 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 520063 >seq92 Length=13896 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 |||||||| || ||||| | || || || || ||||||||||| || || |||| Sbjct 3081 GAGTTCATCTGCGACGCGTTGCCGGTGCGGCTGATCGGCATGAACGCCGAGCTGATGGCG 3022 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 |||||||| || ||||| || |||||| | |||| | || |||| ||||| ||| Sbjct 3021 CAGTACATTGAGTTCGTGGCGGACCGCCTGCTTGTGTCGCTCGGTTTGGAGAAGCACTAC 2962 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 2961 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGACGAACTTC 2902 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 ||||| ||| || | || ||||||| | | || ||||||| Sbjct 2901 TTCGAGAAGAAGGTGGGCGAGTATCAGAAGGCGGGCGTGATGA 2859 >seq14 Length=1309914 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475 ||||| || || ||||| | || || || |||||||||||| | || || |||| Sbjct 798203 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACTCCGAGCTGATGGCG 798262 Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535 ||||||||||| ||||| || |||||| | |||| | || || | ||||| ||| Sbjct 798263 CAGTACATCGAGTTCGTGGCGGACCGCCTGCTTGTGTCGCTGGGGTTGGAGAAGCACTAC 798322 Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595 ||| | | | ||||| | || |||||| | || ||||| || || ||||| |||||| Sbjct 798323 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 798382 Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGA 230638 || || ||| || | || || |||| | | || ||||||| Sbjct 798383 TTTGAGAAGAAGGTGGGCGAGTACCAGAAGGCGGGCGTGATGA 798425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057817792556540