Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq21 122 1e-22 seq331 118 1e-21 seq26 118 1e-21 seq20 113 5e-20 seq383 89.7 6e-13 seq32 89.7 6e-13 seq17 89.7 6e-13 seq30 87.8 2e-12 seq18 86.0 7e-12 >seq21 Length=2191012 Score = 122 bits (134), Expect = 1e-22 Identities = 152/207 (73%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 978823 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 978882 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || ||||| || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 978883 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 978942 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 978943 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 979002 Query 43161 AGCGTCTTTAC-AAAGATTTGCATTTT 43186 |||||||| || |||||| |||||||| Sbjct 979003 AGCGTCTTCACGAAAGATCTGCATTTT 979029 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 976999 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 977058 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || ||||| || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 977059 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 977118 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 977119 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 977178 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 977179 AGCGTCTTCACGAAGATCTGCAT 977201 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 978595 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 978654 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || ||||| || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 978655 TTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 978714 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 978715 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 978774 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 978775 AGCGTCTTCACGAAGATCTGCAT 978797 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 977227 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 977286 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 977287 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 977346 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 977347 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 977406 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 977407 AGCGTCTTCACGAAGATCTGCAT 977429 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 977455 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 977514 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 977515 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 977574 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 977575 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 977634 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 977635 AGCGTCTTCACGAAGATCTGCAT 977657 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 977683 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 977742 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 977743 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 977802 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 977803 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 977862 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 977863 AGCGTCTTCACGAAGATCTGCAT 977885 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 977911 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 977970 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 977971 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 978030 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 978031 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 978090 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 978091 AGCGTCTTCACGAAGATCTGCAT 978113 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 978139 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 978198 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 978199 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 978258 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 978259 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 978318 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 978319 AGCGTCTTCACGAAGATCTGCAT 978341 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| || || || || || | || || |||||| Sbjct 978367 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 978426 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || || || || || ||||||||||| | || | || |||||||||| ||| || Sbjct 978427 TTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTC 978486 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 || | || | | ||||||||| | ||||| || | || |||||| ||||| || Sbjct 978487 GCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTC 978546 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||| ||||| Sbjct 978547 AGCGTCTTCACGAAGATCTGCAT 978569 >seq331 Length=20977 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| ||| |||||| || || ||||| || || || || || | Sbjct 8083 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 8142 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | || | || ||||||| Sbjct 8143 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 8202 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||| | ||||| || | || |||| Sbjct 8203 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATG 8262 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| || ||||| ||||| Sbjct 8263 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8297 >seq26 Length=613868 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| ||| |||||| || || ||||| || || || || || | Sbjct 365970 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 366029 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | || | || ||||||| Sbjct 366030 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 366089 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| || || |||| | ||| Sbjct 366090 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGATC 366149 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| |||||||| || ||||| ||||| Sbjct 366150 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 366184 >seq20 Length=1996037 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| ||| |||||| || || ||||| || || || || || | Sbjct 1271131 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 1271190 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 1271191 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTA 1271250 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||||||||||| || || |||| | ||| Sbjct 1271251 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGATC 1271310 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || |||||||| |||||||| ||||| Sbjct 1271311 GTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 1271345 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 1019434 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 1019493 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 1019494 CCGAGAACTGAA 1019505 >seq383 Length=20908 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 12302 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 12243 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 12242 CCGAGAACTGAA 12231 >seq32 Length=29358 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 15383 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 15324 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 15323 CCGAGAACTGAA 15312 >seq17 Length=1449266 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 1103473 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 1103414 Query 60131 CCGAGGATTGAA 60142 ||||| | |||| Sbjct 1103413 CCGAGAACTGAA 1103402 >seq30 Length=661897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 322062 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 322121 Query 60131 CCGAGGAT 60138 ||||| || Sbjct 322122 CCGAGAAT 322129 >seq18 Length=1454827 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||||||| Sbjct 466298 CGGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTATACTA 466357 Query 60131 CCGAG 60135 ||||| Sbjct 466358 CCGAG 466362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571814326344240