Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq331 125 5e-24 seq21 125 5e-24 seq20 122 6e-23 seq26 116 2e-21 >seq331 Length=20977 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||| ||||| | || || ||||| ||||||||||| | Sbjct 8071 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 8130 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 8131 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 8190 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 8191 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 8250 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 8251 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8297 >seq21 Length=2191012 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 976975 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977034 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 977035 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977094 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 977095 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 977154 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 977155 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977201 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 977203 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977262 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 977263 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977322 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 977323 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 977382 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 977383 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977429 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 977431 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977490 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 977491 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977550 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 977551 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 977610 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 977611 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977657 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 977659 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977718 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 977719 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977778 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 977779 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 977838 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 977839 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977885 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 977887 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977946 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 977947 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978006 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 978007 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978066 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 978067 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978113 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 978115 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978174 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 978175 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978234 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 978235 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978294 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 978295 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978341 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 978343 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978402 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 978403 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978462 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 978463 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978522 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 978523 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978569 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 978571 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978630 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 978631 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978690 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 978691 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978750 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| ||||||||||| Sbjct 978751 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978797 Score = 123 bits (136), Expect = 2e-23 Identities = 165/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||||||||| | ||||| ||||| | || || ||||| ||||||||||| | Sbjct 978799 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978858 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 978859 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978918 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| | | || || Sbjct 978919 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978978 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC-AAAGATCTGCAT 34389 |||| || |||||| |||||||| || || ||||| |||||||||||| Sbjct 978979 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAAGATCTGCAT 979026 >seq20 Length=1996037 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||| ||||| | || || ||||| ||||||||||| | Sbjct 1271119 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 1271178 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 1271179 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 1271238 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | |||| ||| ||| ||||| Sbjct 1271239 ATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 1271298 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | | ||| || |||||||| || || ||||||||||||||||| Sbjct 1271299 TCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 1271345 >seq26 Length=613868 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||| ||||| | || || ||||| ||||||||||| | Sbjct 365958 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 366017 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| || || || || ||||||||||| ||| Sbjct 366018 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 366077 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | |||| ||| ||| ||||| Sbjct 366078 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACC 366137 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | | ||| || ||||| || || || ||||| ||||||||||| Sbjct 366138 TCGAGGGCGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 366184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070196652480