Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq24 123 5e-23 seq14 100 6e-16 seq92 89.7 1e-12 seq17 87.8 4e-12 >seq24 Length=2960390 Score = 123 bits (136), Expect = 5e-23 Identities = 555/866 (64%), Gaps = 24/866 (3%) Strand=Plus/Plus Query 248875 AAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGAT 248934 ||||| ||||| || ||||| | || |||| || ||| |||| || ||| | Sbjct 299118 AAGATTGTGGAGCGTCCGCAGCAGCTCTTTCTGCGTGTTGCTCTCGGCATCCACGTCGGC 299177 Query 248935 GACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCC 248994 ||| | ||| ||| | ||||||||||| | ||| | ||| | || || ||| Sbjct 299178 GACCTGAAGAACGTCCGCGAGACGTACAACCTCATGTCGAAGGGCTTCTTCACCCACGCC 299237 Query 248995 ACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTT 249054 || |||||||||||||||||||| || || ||| ||||||||||||| || | Sbjct 299238 ACGCCGACGCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCCTCGTG 299297 Query 249055 GCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATT 249114 || | | || ||| |||||||||| || |||||||| || || || ||| Sbjct 299298 GCGTCGAAGGAGGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCCGTGATC 299357 Query 249115 TCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTAC 249174 ||| || || || ||||| || ||| |||||| || || ||| ||| Sbjct 299358 AGCAAAGCAGCTGGTGGCATCGGCCTGCACGTGCACAACATTCGTGCCGCGGGCAGCTAC 299417 Query 249175 ATCAAAGGTACAAATGGG--GTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232 ||| || || || ||| ||| | || | || || | || || || | Sbjct 299418 ATCGCCGGCACGAACGGGACGTC--GAACGGGTTGGTGCCGATGCTGCGCGTGTTCAACA 299475 Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGGGCG---CCGAAAGGGGTCGTTCGCCATGTATT 249289 ||| ||| | | | | |||||| ||| | || ||||| | |||||||| || Sbjct 299476 ACACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATCTACC 299535 Query 249290 TGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACG 249349 | || |||||||||||| || || | |||||| |||| |||| |||||| | Sbjct 299536 TTGAGCCGTGGCACGCCGACATCTTTGGCTTCCTGCTGCTGAAGCGCAACACCGGCAAGG 299595 Query 249350 AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCC 249409 | | | | || || ||||||||||||| ||||||||| | ||| | |||||| | Sbjct 299596 ATGACCAGCGTGCCCGCGACCTCTTCTACGCGCTGTGGGTCCCGGACCTCTTCATGAAGC 299655 Query 249410 GCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCG 249469 | || ||| ||| || | |||||||| | ||| | | ||||| |||| || Sbjct 299656 GTGTGAAGAGCGAGGGGAAGTGGACGCTGATGGACCCGAGCACCTGCCCGGGGCTCAGCG 299715 Query 249470 ATCTAC-ACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCATCG 249526 | || | |||||| || ||||| | |||| || || ||||| || | ||| || Sbjct 299716 A-CTGCTACGGCGAAGAGTTCGAGC--GCCTCTACGAGCGCTACGAGGCCGAGGGCCGCG 299772 Query 249527 GC---AAGACAATCAAGGCTC-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGATAG 249580 || |||| || |||| | ||| | || || | | | ||||| ||||| | Sbjct 299773 GCGTGCAGACCCTCCAGGCGCAGGAGGTGTGGTTCGCCA---TCCTCGAGTCGCAGATCG 299829 Query 249581 AGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGG 249639 ||||||| | ||| | | || | | ||| |||||||||||| |||| ||||| | Sbjct 299830 AGACAGGCGTGCCCT-TCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAACCAGAAG 299888 Query 249640 CATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAG 249699 | || || |||||| | || || || || | ||| | | | | | |||| | Sbjct 299889 AACCTCGGCACCATCAAGTGCTCGAACCTGTGCACCGAGATCGTCGAGTTCACGTCGCCG 299948 Query 249700 GAGGAGATTGCCGTCTGCAACCTGGC 249725 ||||||| || || |||||||| || Sbjct 299949 GAGGAGACGGCGGTGTGCAACCTCGC 299974 >seq14 Length=1309914 Score = 100 bits (110), Expect = 6e-16 Identities = 271/404 (67%), Gaps = 13/404 (3%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | |||||||| ||||| ||||| ||||| || || ||||| ||||| Sbjct 798406 GTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCAT 798347 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| ||| || |||||||| ||| | Sbjct 798346 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAACCCCAGCGACACAAGCAGGC 798288 Query 157377 AGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436 ||||||||| |||| |||||||| | ||| || | | || || || ||| | Sbjct 798287 GGTCCGCCACGAACTCGATGTACTGCGCCATCAGCTCGGAGTTCATGCCAATCAGCCGCA 798228 Query 157437 CGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCA 157495 | || ||||| | || | || || |||| ||| | | | || |||| | || || || Sbjct 798227 CCGGCAGCGC-GTCGCAGATAAACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCC 798169 Query 157496 TGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAAG 157550 | || | ||| |||| |||| | | ||||| ||| ||||| | || ||| |||| Sbjct 798168 AGCACGCGCTCGCGCGACAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAG 798109 Query 157551 -CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTG 157609 ||||| || || || ||||| | | ||| || ||| ||| | || ||| Sbjct 798108 TCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGC 798052 Query 157610 AACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 | | | ||||||||||||||| | | |||||||| ||||| Sbjct 798051 ATCAGCCCACGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCC 798008 >seq92 Length=13896 Score = 89.7 bits (98), Expect = 1e-12 Identities = 268/403 (67%), Gaps = 13/403 (3%) Strand=Plus/Plus Query 157259 TACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATC 157318 |||||| |||| | ||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 2879 TACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGGAGCGAGATCATCTCCATG 2938 Query 157319 CACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 | ||||| ||| || || |||||| ||| || | || ||| ||| | Sbjct 2939 AAGTCGAA-GGGCTGCGTCACGTTGTAGTGCTTCTCCAAACCGAGCGACACAAGCAGGCG 2997 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||||||||| |||| ||||||| | ||| || || | || ||||| ||| || Sbjct 2998 GTCCGCCACGAACTCAATGTACTGCGCCATCAGCTCGGCGTTCATGCCGATCAGCCGCAC 3057 Query 157438 GGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 || | ||| | || | ||||| |||| ||| | | | || |||| | | || || Sbjct 3058 CGGCAACGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAGAATGATCTCCA 3116 Query 157497 GAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAAG- 157550 | || | ||| |||| |||| | | ||||| ||| ||||| | || ||| |||| Sbjct 3117 GCACGCGCTCGCGCGACAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGT 3176 Query 157551 CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGA 157610 ||||| || || || ||||| | | ||| || ||| ||| | || ||| | Sbjct 3177 CCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCA 3233 Query 157611 ACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 | | ||||||||||||||| | | |||||||| ||||| Sbjct 3234 TCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCC 3276 >seq17 Length=1449266 Score = 87.8 bits (96), Expect = 4e-12 Identities = 268/404 (66%), Gaps = 13/404 (3%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| |||| | ||||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 520082 GTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATCATCTCCAT 520141 Query 157318 CCACTCGAATGGGTTGGCGCA-GTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGT 157376 | ||||| ||| || || |||||| || || | || ||| ||| | Sbjct 520142 GAAGTCGAA-GGGCTGCGTCACGTTGTAGTGTTTCTCCAAACCGAGCGACACAAGCAGGC 520200 Query 157377 AGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGA 157436 ||||||||| |||| |||||||| | ||| || || | || ||||| ||| | Sbjct 520201 GGTCCGCCACGAACTCGATGTACTGCGCCATCAGCTCGGCGTTCATGCCGATCAGCCGCA 520260 Query 157437 CGGGAAGCGCCGACGAA-ATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCA 157495 | || | ||| | || | ||||| |||| ||| | | | || |||| | | || || Sbjct 520261 CCGGCAACGC-GTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAGAATGATCTCC 520319 Query 157496 TGAACTCTCTCCCGCGGCAGCCTATTCTTGAGATGC---TTGTAGATGAGA-ACG-GAAG 157550 | || | ||| |||| |||| | | ||||| ||| ||||| | || ||| |||| Sbjct 520320 AGCACGCGCTCGCGCGACAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAG 520379 Query 157551 -CCGTGGCGTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTG 157609 ||||| || || || ||||| | | ||| || ||| ||| | || ||| Sbjct 520380 TCCGTG---TGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGC 520436 Query 157610 AACTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCC 157653 | | | ||||||||||||||| | | |||||||| ||||| Sbjct 520437 ATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCC 520480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073760099004544