Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq17 111 2e-19 seq21 91.5 1e-13 seq331 87.8 2e-12 >seq17 Length=1449266 Score = 111 bits (122), Expect = 2e-19 Identities = 249/363 (69%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 52705 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGAT 52764 ||||| || || || || ||||||||| |||| ||||||||||| || ||||||| || Sbjct 520438 ATGCCGGGGCTGACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 520379 Query 52765 TTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTA 52824 || ||||| || || || ||| | | || | || |||| || | || Sbjct 520378 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGTCGCGCGAGCGCGTGCTG 520319 Query 52825 GACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTA 52884 || || || || || || |||| || ||||| | ||||| || || || Sbjct 520318 GAGATCATTCTGGACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGTTGCCGGTG 520259 Query 52885 TCATTGTTGGGCATGAACGC-GACCATGATGTGCG-AGTACATCGAGTTTGTTGCGGACA 52942 || | ||||||||||| || | ||||| ||| ||||||||||||| || |||||| Sbjct 520258 CGGCTGATCGGCATGAACGCCGAGC-TGATG-GCGCAGTACATCGAGTTCGTGGCGGACC 520201 Query 52943 GACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCG-CGTAACCCCTTTTCG--T 52999 | ||| | || ||||||| | |||| |||| || | | || | ||| |||| | Sbjct 520200 GCCTGCTTGTGTCGCTCGGTTTGGAGAAACACTACAACGTGACGCAGCCC---TTCGACT 520144 Query 53000 TTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGA-GACGTGTGGGCGAG 53058 | ||| | | || ||||| ||||||| |||||||| ||||||| || | ||||||||| Sbjct 520143 TCATGGAGATGATCTCGCTGCAGGGCAAGACAAACTTCTTCGAGAAGAAG-GTGGGCGAG 520085 Query 53059 TAC 53061 ||| Sbjct 520084 TAC 520082 >seq21 Length=2191012 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 976975 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977034 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| ||||||| || ||||| || || || Sbjct 977035 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977094 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 977095 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 977154 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | ||||||||||||| ||| || ||||| || |||||| Sbjct 977155 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 977202 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 978571 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978630 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| ||||||| || ||||| || || || Sbjct 978631 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978690 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 978691 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978750 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | ||||||||||||| ||| || ||||| || |||||| Sbjct 978751 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 978798 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 977203 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977262 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 977263 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977322 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 977323 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 977382 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | ||||||||||||| ||| || ||||| || |||||| Sbjct 977383 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 977430 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 977431 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977490 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 977491 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977550 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 977551 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 977610 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | ||||||||||||| ||| || ||||| || |||||| Sbjct 977611 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 977658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 977659 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977718 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 977719 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 977778 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 977779 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 977838 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | ||||||||||||| ||| || ||||| || |||||| Sbjct 977839 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 977886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 977887 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 977946 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 977947 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978006 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 978007 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978066 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | ||||||||||||| ||| || ||||| || |||||| Sbjct 978067 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 978114 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 978115 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978174 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 978175 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978234 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 978235 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978294 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | ||||||||||||| ||| || ||||| || |||||| Sbjct 978295 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 978342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 978343 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978402 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 978403 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978462 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 978463 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978522 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | | | ||||||||||||| ||| || ||||| || |||||| Sbjct 978523 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 978570 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 978799 CCGCCGCGCAGGCGAAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCG 978858 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| ||||||| || ||||| || || || Sbjct 978859 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGA 978918 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| ||| ||||||| Sbjct 978919 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACC 978978 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG-AATATTTGCAT 139764 || | | | ||||||||||||| ||| || ||| || || ||||| Sbjct 978979 TCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAAGATCTGCAT 979026 >seq331 Length=20977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 8070 GCCACCGCGCAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGC 8129 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || ||||| || || ||| ||||||| || ||||| || || || Sbjct 8130 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 8189 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||| ||| |||||| Sbjct 8190 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCAC 8249 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | | | ||||||||||||| ||| || ||||| || ||||| Sbjct 8250 CTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061160033600