Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq14 161 1e-34 seq17 149 9e-31 seq92 147 3e-30 seq24 114 2e-20 >seq14 Length=1309914 Score = 161 bits (178), Expect = 1e-34 Identities = 589/900 (65%), Gaps = 58/900 (6%) Strand=Plus/Plus Query 124994 CCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTT 125053 |||||| || |||| ||| |||||||| ||| | |||||| || || || | | Sbjct 797542 CCTGTTCCCGATCATGTACCATGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCAT 797601 Query 125054 TTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGAC 125113 |||||| | || ||| ||||||| ||| ||| || | || ||| | | | ||| Sbjct 797602 CTGGACGCTGGAGGAGATCGATCTTGGCAACGACATGAAGGACTGGTTGGCGC---TGAA 797658 Query 125114 TGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 || ||||| | || || |||| | | |||||||| |||||| ||| || || Sbjct 797659 CGACGGCGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCAT 797718 Query 125174 CGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT 125232 ||| | ||| || || | | | || ||| || ||| | || |||| | ||| Sbjct 797719 CGTGATCGAGAACCTCGCTCAG-CGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGT 797776 Query 125233 GCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 || || ||||||||||| | ||||| |||||| | |||||||| | |||||| ||| Sbjct 797777 GCGTTCTACGGATTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTG 797836 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCT--TTAACGCAATCGAC 125348 | |||| |||||| | || | || | | || ||| ||| | |||| || | Sbjct 797837 CTGGACACGTACAT-CACGGACAGCGAGGAGAAGC--TGCGTCTGCTGCACGCGATTCAG 797893 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CA 125406 ||| | |||| || | || ||||| | |||| | | || ||||||| ||| | Sbjct 797894 ACGATCCCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGATGGATCGGCAGCGAGGCG 797953 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-G 125465 || |||| || | ||| | | || || ||||| |||||||||||||| || | Sbjct 797954 AG-CTTCCAG----GAGCGGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTCTTCTCCG 798008 Query 125466 GGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 ||| || |||| | | || ||||| |||||||| || || ||||| || ||||| | Sbjct 798009 GGTCCTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGTGGGCTGATGCCGGGGCTGACCTTC 798067 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT-- 125583 || |||||| | || || || ||||||||||| ||| ||||| || || |||| Sbjct 798068 AGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTAC 798127 Query 125584 --TTCGCA--------ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC 125633 ||||| || | ||| | |||| || | | || || ||||| Sbjct 798128 AACTCGCACATCAAGCACAAGCTGTCGCGCGAGCGC-------GTGCTG--GAGATCATC 798178 Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693 || || || |||| || || | |||||| | ||| | || ||||| Sbjct 798179 ------GT---GGACGCGGTGAACATCGAGCGCGAGTTTATCTGCGACGCGCTGCCGGTG 798229 Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCG 125752 | ||||||||||||||| | |||| ||| ||| ||||||| ||||| ||||| || || Sbjct 798230 CGGCTGATTGGCATGAACTCCGAGCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 798288 Query 125753 TCTAC-TGT-ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTC 125810 || | ||| || | |||| ||| ||||||| | | | ||||| || ||| Sbjct 798289 CCTGCTTGTGTCGCTGGGGTTGG--AGAAGCACTACAACGTGACGCAGCCCTTCGACTTC 798346 Query 125811 ATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| | || || || |||| ||||| ||||| || ||||||||||| |||||||| Sbjct 798347 ATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTTGAGAAGAAGGTGGGCGAGTAC 798406 >seq17 Length=1449266 Score = 149 bits (164), Expect = 9e-31 Identities = 581/887 (66%), Gaps = 41/887 (5%) Strand=Plus/Minus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| |||| ||| | |||||| ||| | |||||| || || || | | ||| Sbjct 520942 TTCCCGATCATGTACCCTGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGG 520883 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 ||| | || ||| |||| || ||| ||| || | || |||| || | ||| || Sbjct 520882 ACGCTGGAGGAGATCGACCTTGGCAACGACATGAAGGACTGGGTGAGGC---TGAACGAC 520826 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||||| | || || |||| | | |||||||| |||||| ||| || ||||| Sbjct 520825 GGCGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTG 520766 Query 125178 AACGACAATCTGTTGACA-CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC-T 125235 | ||| || || | | | || ||| || ||| | || |||| | ||||| | Sbjct 520765 ATCGAGAACCT-TGCAGAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGTGCGT 520708 Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295 ||||||| ||||| ||||||| |||||| | |||||||| | |||||| ||| | | Sbjct 520707 TTTACGGCTTCCAGCTCATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGG 520648 Query 125296 ACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTA---ACGCAATCGACACGG 125352 ||| |||||| | || | || | | || | ||| || |||| ||| | || Sbjct 520647 ACACGTACAT-CACGGACAGCGAGGAGAAGA--TGCGGTTGCTGCACGCGATCCAGACAA 520591 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAAGTC 125410 | |||| || | || ||||| | |||| | | || ||||||| ||| | || | Sbjct 520590 TCCCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGCAGCGAGGCGAG-C 520532 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTA 125469 ||| || | ||| | | ||||| ||||| |||||||||||||| || |||| Sbjct 520531 TTCCAG----GAGCGCCTGATCGGGTTCGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTC 520476 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| | | || ||||| ||||||||||| || ||||| || ||||| ||| | Sbjct 520475 CTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACCTTCAGCA 520417 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||| ||||| || || |||| || Sbjct 520416 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGT---ACA 520360 Query 125590 ACT---ATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACC 125645 ||| | | | | || || | | |||| | || || |||| | Sbjct 520359 ACTCGCACATCAAGCACAAGCTGTCGCGCGAGCG-CGTGCTGGAGAT---CATTCT---G 520307 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGC 125705 || || |||| || || | ||||| | ||| | | ||||| | |||| ||| Sbjct 520306 GACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGTTGCCGGTGCGGCTGATCGGC 520247 Query 125706 ATGAACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTACG 125763 |||||| | |||| ||| ||| ||||||| ||||| ||||| || || || | ||| Sbjct 520246 ATGAACGCCGAGCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCGCCTGCTTGTGTC 520188 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | | || | | || | ||||||| | | | ||||| || |||||| | || | Sbjct 520187 GCTCGGTTTGGAGAAACA-CTACAACGTGACGCAGCCCTTCGACTTCATGGAGATGATCT 520129 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || |||| ||||| ||||| |||||||||||||| |||||||| Sbjct 520128 CGCTGCAGGGCAAGACAAACTTCTTCGAGAAGAAGGTGGGCGAGTAC 520082 >seq92 Length=13896 Score = 147 bits (162), Expect = 3e-30 Identities = 581/886 (66%), Gaps = 41/886 (5%) Strand=Plus/Minus Query 124999 TTCCC-ATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 ||||| |||| ||| | |||||| ||| | |||||| || || || | | ||| Sbjct 3738 TTCCCGATCATGTACCCTGACATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGG 3679 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 ||| | || ||| |||| || ||| ||| || | || |||| || | ||| || Sbjct 3678 ACGCTGGAGGAGATCGACCTTGGCAACGACATGAAGGACTGGGTGAGGC---TGAACGAC 3622 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||||| | || || |||| | | |||||||| |||||| ||| || ||||| Sbjct 3621 GGCGAGCGGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTG 3562 Query 125178 AACGACAATCTGTTGACA-CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC-T 125235 | ||| || || | | | || ||| || ||| | || |||| | ||||| | Sbjct 3561 ATCGAGAACCT-TGCAGAGCGCTTCATGAGCGACGTGAAAGTGCCGGAGGCG-CGTGCGT 3504 Query 125236 TTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTG 125295 ||||||| ||||| | ||||| |||||| | |||||||| | |||||| ||| | | Sbjct 3503 TTTACGGCTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGG 3444 Query 125296 ACATGTACATTCGCGATCCGCAACGTAAACACATGC-TCT--TTAACGCAATCGACACGG 125352 ||| |||||| | || | || | | || | ||| ||| | |||| ||| | ||| Sbjct 3443 ACACGTACAT-CACGGACAGCGAGGAGAAGA--TGCGTCTGCTGCACGCGATCCAGACGA 3387 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA--CAAGTC 125410 | |||| || | || ||||| | |||| | | || ||||||| ||| | || | Sbjct 3386 TCCCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGCAGCGAGGCGAG-C 3328 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTA 125469 ||| || | ||| | | || || ||||| |||||||||||||| || |||| Sbjct 3327 TTCCAG----GAGCGGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTC 3272 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| | | || ||||| ||||||||||| || ||||| || ||||| ||| | Sbjct 3271 CTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACCTTCAGCA 3213 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||| ||||| || || |||| || Sbjct 3212 ACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGT---ACA 3156 Query 125590 ACT---ATCTGCGTCCCGAG-TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACC 125645 ||| | | | | || || | | |||| | || || |||| | Sbjct 3155 ACTCGCACATCAAGCACAAGCTGTCGCGCGAGCG-CGTGCTGGAGAT---CATTCT---G 3103 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGC 125705 || || |||| || || | ||||| | ||| | | ||||| | |||| ||| Sbjct 3102 GACGCGGTGAACATCGAGCGCGAGTTCATCTGCGACGCGTTGCCGGTGCGGCTGATCGGC 3043 Query 125706 ATGAACTGCAAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTAC-TGTACG 125763 |||||| | |||| ||| ||| ||||||| ||||| ||||| || || || | ||| Sbjct 3042 ATGAACGCCGAGCTGATG-GCGCAGTACATTGAGTTCGTGGCGGACCGCCTGCTTGTGTC 2984 Query 125764 AGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 | | || | | ||| ||||||| | | | ||||| || |||||| | || | Sbjct 2983 GCTCGGTTTGGAG-AAGCACTACAACGTGACGCAGCCCTTCGACTTCATGGAGATGATCT 2925 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 | || |||| ||||| ||||| |||||||||||||| ||||||| Sbjct 2924 CGCTCCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGTA 2879 >seq24 Length=2960390 Score = 114 bits (126), Expect = 2e-20 Identities = 317/477 (66%), Gaps = 12/477 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||| ||| || ||||| | ||| ||||| | || || |||||||| ||| Sbjct 299496 CAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATCTACCTTGAGCCGTGGCACGCCGAC 299555 Query 96936 GTTTTTGACTTTATCGAGATG---CGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGG 96992 | |||| ||| | | || ||||| | | ||| || || || ||| | Sbjct 299556 ATCTTTGGCTTCCTGCTGCTGAAGCGCAACACC---GGCAAGGATGACCAGCGTGCCCGC 299612 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || || || || ||||| || || | ||||||||||| || || || || Sbjct 299613 GACCTCTTCTACGCGCTGTGGGTCCCGGACCTCTTCATGAAGCGTGTGAAGAGCGAGGGG 299672 Query 97053 TACTGGAGCCTAATGTGCCCCGA-CTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGA 97111 | |||| || ||| | ||||| | | | || || || ||| |||| |||||||| Sbjct 299673 AAGTGGACGCTGATG-GACCCGAGCACCTGCCCGGGGCTCAGCGACTGCTACGGCGAAGA 299731 Query 97112 GTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTG-AGACGAGTCGATG 97170 ||| ||| | ||| | ||||||| |||||||| |||| |||| || | | Sbjct 299732 GTTCGAGCGCCTCTACGAGCGCTACGAGGCCGAGGGCCGCGGCGTGCAGACCC-TCCAGG 299790 Query 97171 CACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | | || ||||| |||||| | | | ||| | ||||| || || | ||| | Sbjct 299791 CGCAGGAGGTGTGGTTCGCCATCCTCGAGTCGCAGATCGAGACAGGCGTGCCCTTCATCC 299850 Query 97231 TCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||| | ||| | | |||| ||||| || | |||||||||||| || Sbjct 299851 TCTACAAGGACGC-GTGCAACAGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGTGC 299909 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 || || |||||||| || || || |||| | | || ||||| |||||||| || ||| Sbjct 299910 TCGAACCTGTGCACCGAGATCGTCGAGTTCACGTCGCCGGAGGAGACGGCGGTGTGC 299966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054957436080