Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq331 91.5 1e-13 seq21 84.2 2e-11 seq20 84.2 2e-11 seq28 82.4 7e-11 seq26 82.4 7e-11 seq22 82.4 7e-11 seq16 82.4 7e-11 >seq331 Length=20977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | ||||| || || ||||| || | ||| || || | ||| | Sbjct 8083 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 8142 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 8143 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 8202 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||| ||| ||| ||||| || ||| || || || | || || Sbjct 8203 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GC-TGGCCTCCACCTCCAGCGCGA 8260 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| || || || || || ||||| |||||||||||| Sbjct 8261 TGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 8298 >seq21 Length=2191012 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 977275 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 977334 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||| ||| ||| ||||| || ||| || || || | || || Sbjct 977335 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GC-TGGCCTCCACCTCCAGCGCGA 977392 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| ||||||||||| Sbjct 977393 TGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 977503 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 977562 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||| ||| ||| ||||| || ||| || || || | || || Sbjct 977563 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GC-TGGCCTCCACCTCCAGCGCGA 977620 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| ||||||||||| Sbjct 977621 TGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 977731 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 977790 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||| ||| ||| ||||| || ||| || || || | || || Sbjct 977791 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GC-TGGCCTCCACCTCCAGCGCGA 977848 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| ||||||||||| Sbjct 977849 TGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 977885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 977959 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 978018 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||| ||| ||| ||||| || ||| || || || | || || Sbjct 978019 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GC-TGGCCTCCACCTCCAGCGCGA 978076 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| ||||||||||| Sbjct 978077 TGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 978187 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 978246 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||| ||| ||| ||||| || ||| || || || | || || Sbjct 978247 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GC-TGGCCTCCACCTCCAGCGCGA 978304 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| ||||||||||| Sbjct 978305 TGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 978415 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 978474 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||| ||| ||| ||||| || ||| || || || | || || Sbjct 978475 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GC-TGGCCTCCACCTCCAGCGCGA 978532 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || || ||||| ||||||||||| Sbjct 978533 TGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 978569 >seq20 Length=1996037 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | ||||| || || ||||| || | ||| || || | ||| | Sbjct 1271131 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 1271190 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || || Sbjct 1271191 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTA 1271250 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | || || ||||| ||| ||| ||||| || | ||||| || | | ||| Sbjct 1271251 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTCGCCTCGACCTCGAGGGCGAT 1271309 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || |||||||||||||||||| || Sbjct 1271310 CGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCATGGTT 1271349 >seq28 Length=632656 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 414240 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 414299 >seq26 Length=613868 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| | ||||| || || ||||| || | ||| || || | ||| | Sbjct 365970 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 366029 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| ||||||| | | ||||| || || ||||| || || ||| Sbjct 366030 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 366089 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGAT 94971 || | || || ||||| ||| ||| ||||| || | ||||| || | | ||| Sbjct 366090 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTC-GCTCGCCTCGACCTCGAGGGCGAT 366148 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || ||||| |||||||||||| Sbjct 366149 CGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 366185 >seq22 Length=2193588 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 1114626 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 1114567 >seq16 Length=1411685 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 115617 GGTGAGGATCGAACTCACAACCTTGGCATTATAAGTACCACGCGCTGCCGATTGCGCTAC 115676 |||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||| Sbjct 976154 GGTGAGGATCGAACTCACGACCTTGGGATTATGAGACCCACGCGCTGCCGACTGCGCTAC 976095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288633532880