Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 5e-13 >seq24 Length=2960390 Score = 89.7 bits (98), Expect = 5e-13 Identities = 309/470 (66%), Gaps = 19/470 (4%) Strand=Plus/Minus Query 148241 GCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAA 148300 ||| ||||||||||| ||||| ||| |||||| |||| ||| ||||| ||| | | Sbjct 299768 GCCCTCGGCCTCGTAGCGCTCGTAGAGGCGCTCGAACTCTTCGCCGTAGCAGTCGCTGAG 299709 Query 148301 ACCGGGACA-CTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTTACCCTCTTCA 148359 || || || | ||||| | ||||| | ||| ||||| | |||| || | ||||| Sbjct 299708 CCCCGGGCAGGTGCTCGGGTC-CATCAGCGTCCACTTCCCCTCGCTCTTCACACGCTTCA 299650 Query 148360 TAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGC---CTTCATATCCTCGG 148416 | || || || || ||||| || | | || ||||| || || ||||| | Sbjct 299649 TGAAGAGGTCCGGGACCCACAGCGCGTAGAAGAGGTCGCGGGCACGCTGGTCATCCTTG- 299591 Query 148417 CACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGT 148476 || | |||||||| || || || ||| | ||| |||||||| ||||| | || Sbjct 299590 --CCGGTGTTGCGCTTCAGCAGCAGGAAGCCAAAGATGTCGGCGTGCCACGGCTCAAGGT 299533 Query 148477 ATACGGTCATGGCGCCTTTCCTTTTA---CCTCCTTGATCGACATGGCGTAGCATGCTAT 148533 | | || | |||||| || | ||| || || || || || | ||| | || | | Sbjct 299532 AGATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGT 299473 Query 148534 TAAAAACACGCAATGCA--GGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAATTTT 148591 | || || |||| ||| || |||| || || || ||||| ||| | || | Sbjct 299472 TGAACACGCGCA--GCATCGGCACCAACCCGTTCGACGTCCCGTTCGTGCCGGCGATGTA 299415 Query 148592 ACTATTGGTGGCGCGAAT-TTGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAGAT- 148649 || | ||| ||||| ||| | || | |||||||||||| || | || || | | Sbjct 299414 GCTGCCCGCGGCACGAATGTTGTG-CACGTGCAGGCCGATGCCACCAGC-TGCTTTGCTG 299357 Query 148650 ATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTC 148699 |||| ||| || || || || || | |||||||||| || |||||||| Sbjct 299356 ATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCGTCGATGCTGTCCTC 299307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478659659657760