Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq24 174 4e-38 >seq24 Length=2960390 Score = 174 bits (192), Expect = 4e-38 Identities = 514/777 (66%), Gaps = 24/777 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||||||||| || | | ||| || || || | || || |||||| || Sbjct 299226 TTCACCCACGCCACGCCGACGCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCG 299285 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || | |||||| || |||||| || |||| ||||| || ||| | Sbjct 299286 TGCTTCCTCGTGGCGTCGAAGGAGGACAGCATCGACGGCATCTACGACACGCTGAAGGAG 299345 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 || || | || ||| || || || || || || | || | ||||| |||||| Sbjct 299346 TGCGCCGTGATCAGCAAAGCAGCTGGTGGCATCGGCCTGCA-CG-TGCACAACATTCGTG 299403 Query 363725 CACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 | | ||| ||||| |||||| | |||| ||||| ||| |||| || ||||| Sbjct 299404 CCGCGGGCAGCTACATCGCCGGCACGAACGGGA-CGTCGAACGGGTTGGTGCCGATGCTG 299462 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 || ||||| |||| || || | ||||| |||||||| || || |||||||| || || Sbjct 299463 CGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCC 299522 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA- 363902 || || || || || ||||| || ||||| || |||| || || ||| | ||| Sbjct 299523 TTCGCCATCTACCTTGAGCCGTGGCACGCCGACATCTTTGGCTTCCT---GCTGCTGAAG 299579 Query 363903 --AAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 ||||| || || || || |||||| || || || ||||| || || ||||| | Sbjct 299580 CGCAACACCGGCAAGGATGACCAGCGTGCCCGCGACCTCTTCTACGCGCTGTGGGTCCCG 299639 Query 363961 GACCATTTTATGAAGCGCGTG--GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACG 364018 |||| || |||||||| ||| ||| ||| ||| ||| | || | ||| | Sbjct 299640 GACCTCTTCATGAAGCGTGTGAAGAGCGAGG--GGAAGTGGACGCTGATGGACCCGAGCA 299697 Query 364019 AATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078 || || || || ||| | || || || | | || ||||| || | Sbjct 299698 CCTGCCCGGGGCTCAGCGACTGCTACGGCGAAGAGTTCGAGCGCCTCTACGAGCGCTACG 299757 Query 364079 AATCGGAGGG-AAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATG 364137 | | ||||| ||| | |||| | | || ||| || | ||||| |||||| | Sbjct 299758 AGGCCGAGGGCCGCGGCGTG-CAGACCCTCCAGGCGCAGGAGGTGTGGTTCGCCATCCTC 299816 Query 364138 GATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAG 364197 || |||||||| |||||||| |||| || | ||||| || |||||||| ||||| Sbjct 299817 GAGTCGCAGATCGAGACAGGCGTGCCCTTCATCCTCTACAAGGACGCGTGCAACAGCAAG 299876 Query 364198 TCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC---AACCTATGTACCGAGATTATT 364254 || |||||| || |||| || || | ||| || || ||||| || |||||||| | Sbjct 299877 TCGAACCAGAAGAACCTCGGCACCA-TCA--AGTGCTCGAACCTGTGCACCGAGATCGTC 299933 Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCG 364311 || | ||| | || || ||||| || || || ||||| || || |||||| | ||| Sbjct 299934 GAGTTCACGTCGCCGGAGGAGACGGCGGTGTGCAACCTCGCCTCCATCGCGTTGCCG 299990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345951758156