Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq24 86.0 8e-12 seq20 86.0 8e-12 >seq24 Length=2960390 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 126208 TCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTG 126267 |||||||| |||| || ||||| || ||||| |||||| | | | || ||| Sbjct 908771 TCCTTGCCGCCCTGCAGACGCGTACCGAACTGTCCGTCCTTGCGGAGGAGGGGGACGTTG 908712 Query 126268 TTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCAC-AGGTTCTGCTCGCC 126326 ||| || || ||||||||||| | ||| || |||| |||| ||| | ||||||| Sbjct 908711 TTGCTGCCTACGAAGTCCTGCGCCATGCCGACGATCGTCT-GCACGAGGGACGGCTCGCC 908653 Query 126327 GTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||| | |||| ||| ||||||| |||||| || ||||||| | |||||||| Sbjct 908652 GTGGTGGTAGGCGGAGTGCTCGGACACGTAACCCGCCAGCTGCACCACCTTGAT 908599 >seq20 Length=1996037 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/148 (75%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 15050 CCCGAGATTGGCGACAAGTTTTGCT-CTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 ||| | || ||||||||||| ||| | | | || ||| ||||||||| |||||| Sbjct 65437 CCCAACATCGGCGACAAGTTCTGCAGCCGCCACGG-GCAGAAGGGCACGAACGGCATTCA 65379 Query 15109 TTTCCCCCAGGAAGACATGCCCTT-TACCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 |||| |||||| ||||||||||| |||||| | ||| | ||| ||| | || |||| Sbjct 65378 GTTCCGCCAGGAGGACATGCCCTTCAACCGCGAC-GGCGTCGTGCCGGACTTAATTATCA 65320 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGAC 15195 ||||| || ||| || ||||||||||| Sbjct 65319 ACCCCCACGCCATTCCCTCCCGCATGAC 65292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611388499780800