Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 3e-15 seq331 95.1 1e-14 seq21 95.1 1e-14 seq26 91.5 1e-13 >seq20 Length=1996037 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || ||||| ||||| ||||||| || | ||| | |||| || ||| | Sbjct 1271349 AACCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGC 1271290 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 | ||||| |||||| ||||| || ||| || || || || ||||| || || Sbjct 1271289 GAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGA 1271230 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | || || | ||||| | | || || Sbjct 1271229 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTA 1271170 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || || |||||||| || | ||||| Sbjct 1271169 CAACATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 1271134 >seq331 Length=20977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| ||||||| || ||||| | | || |||||| | Sbjct 8300 ACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCC 8241 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| ||||| || ||| ||||| || || ||||| || ||| Sbjct 8240 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 8181 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||||||||| || | || || | ||||| | | || ||| Sbjct 8180 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 8121 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || |||||||| || | ||||| Sbjct 8120 AACATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 8086 >seq21 Length=2191012 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||| | | || |||||| | Sbjct 977429 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977370 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 977369 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977310 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 977309 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977250 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 977249 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 977218 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||| | | || |||||| | Sbjct 977657 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977598 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 977597 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977538 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 977537 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977478 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 977477 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 977446 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||| | | || |||||| | Sbjct 977885 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977826 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 977825 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977766 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 977765 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977706 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 977705 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 977674 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||| | | || |||||| | Sbjct 978113 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978054 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 978053 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977994 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 977993 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977934 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 977933 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 977902 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||| | | || |||||| | Sbjct 978341 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978282 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 978281 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 978222 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 978221 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 978162 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 978161 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 978130 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||| | | || |||||| | Sbjct 978569 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978510 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || ||| ||||| || || ||||| || ||||| Sbjct 978509 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 978450 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||||| | | || ||||| Sbjct 978449 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 978390 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || |||||||| || | ||||| Sbjct 978389 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 978358 >seq26 Length=613868 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| |||| || || | ||| | |||| || ||| || Sbjct 366187 ACCATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCCCTCGAGGTCGAGGCG 366128 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| ||||| || ||| ||||| || || ||||| || ||| Sbjct 366127 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 366068 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||||||||| || | || || | ||||| | | || ||| Sbjct 366067 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 366008 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || |||||||| || | ||||| Sbjct 366007 AACATCCAGAAGGAGTCCACGCTGCACCTCGTGCT 365973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325581217270