Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq92 163 6e-35 seq17 159 7e-34 seq14 154 3e-32 seq24 111 3e-19 >seq92 Length=13896 Score = 163 bits (180), Expect = 6e-35 Identities = 568/866 (66%), Gaps = 39/866 (5%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| | |||||||||||||||||| | || Sbjct 2897 TCGAAGAAGTTCGTCTTGCCCTGGAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 2956 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| || || | || | | |||||| ||||| ||||| | Sbjct 2957 ACGTTGTAGTGCTTCTCCAAACCGAGCGACACAAGCAGGCGGTCCGCCACGAACTCAATG 3016 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 3017 TACTGCGCCATCAGCTCGGCGTTCATGCCGATCAGCCGCACCGGCAACGCGTCGCAGATG 3076 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | || || ||| | | | |||||| Sbjct 3077 AACTCGCGCTCGATGTTCACCGCGTCCAGAATGATCTCCAGCACGCGCTCGCGCGACAGC 3136 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 3137 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 3194 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| ||| | ||||||| | ||| || ||||||| ||| || ||| | |||| Sbjct 3195 CGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCCGCGCTTCTTCAGCC 3254 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC----ACACACCCATGCA 251973 |||| | ||||| ||||| || ||||| | | |||||||| || ||| | Sbjct 3255 AGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGCAGCAAACC----CG 3310 Query 251974 ACAAGGCGCT-CAGCAA--ACGACTTGTCCTG-CGA--CAA-GAACTTCTGTGCCCATGC 252026 | || |||| | | || || || | ||| ||| ||| | || ||||| | Sbjct 3311 ATCAGCCGCTCCTGGAAGCTCGCCTCG--CTGCCGATCCAACGCAC-----CGCCCACTC 3363 Query 252027 TGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGC 252086 ||||||||| || ||||| || | ||| || | | ||| || ||| | Sbjct 3364 TGCCTTCTTCTGAATGCACGGGATCGTCTGGATCGCGTGCAGCAGACGCATCTTCTCCTC 3423 Query 252087 ATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTT 252146 |||| |||| || || ||||| | |||||| ||||||| |||||| || | Sbjct 3424 GCTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCCGAGTGGATGTTCTCCAT 3483 Query 252147 GAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTT 252206 | || |||| | | || || |||||| || | | || || | ||| Sbjct 3484 CATCAGCTGGAAGCCGTAAAACGCACGCGCCTCCGGCACTTTCACGTCGCTCATGAAGCG 3543 Query 252207 GTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTT 252266 | ||||| |||||| ||||| ||||| |||||||| || |||||| | || | | ||| Sbjct 3544 CTCTGCAAGGTTCTCGATCACGATGCCGTCGCTGCCGGCGAAGAAGGCGAGCACGTGCTT 3603 Query 252267 GATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAG 252326 ||||||||| ||||| ||||||| ||| |||| |||||| ||||| | | | Sbjct 3604 GATGAAGTGCCGCTCGCCGTCGTTCAGC--CTCAC-CCAGTCCTTCATGTC--GTTGCCA 3658 Query 252327 AGG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACAC 252383 ||| | || |||| |||||||| | | || || ||||||| ||||| | | Sbjct 3659 AGGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGAT 3717 Query 252384 ATCAGGGTACTTGATTGGGAA-AGCA 252408 ||||||||| |||| ||||| |||| Sbjct 3718 GTCAGGGTACATGATCGGGAAGAGCA 3743 >seq17 Length=1449266 Score = 159 bits (176), Expect = 7e-34 Identities = 568/865 (66%), Gaps = 37/865 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 520101 TCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 520160 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| || || || || | || | | |||||| ||||| ||||| | Sbjct 520161 ACGTTGTAGTGTTTCTCCAAACCGAGCGACACAAGCAGGCGGTCCGCCACGAACTCGATG 520220 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || | ||||||||| |||| || || | || || |||||| Sbjct 520221 TACTGCGCCATCAGCTCGGCGTTCATGCCGATCAGCCGCACCGGCAACGCGTCGCAGATG 520280 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | || || ||| | | | |||||| Sbjct 520281 AACTCGCGCTCGATGTTCACCGCGTCCAGAATGATCTCCAGCACGCGCTCGCGCGACAGC 520340 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 520341 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 520398 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| ||| | ||||||| | ||| || ||||||| ||| || ||| | |||| Sbjct 520399 CGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCCGCGCTTCTTCAGCC 520458 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 |||| | ||||| ||||| || ||||| | | |||||||| | | | | | Sbjct 520459 AGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGCAGCGAACCCGATCA 520518 Query 251978 GGCGCT-CAGCAA--ACGACTTGTCCTG-CGA--CAA-GAACTTCTGTGCCCATGCTGCC 252030 |||||| | | || || || | ||| ||| ||| | || ||||| ||||| Sbjct 520519 GGCGCTCCTGGAAGCTCGCCTCG--CTGCCGATCCAACGCAC-----CGCCCACTCTGCC 520571 Query 252031 TTCTTTCCAACCGCGGGGATTGTTTCGATTGCAT-CA--AAGAGAGAGTTCCGCTCGGCA 252087 ||||| || |||||||| | ||| || | || || | ||| |||| Sbjct 520572 TTCTTCTGAATGCACGGGATTGTCTGGATCGCGTGCAGCAACCGCATCTTCTCCTCG--- 520628 Query 252088 TCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTG 252147 |||| |||| || || ||||| | |||||| ||||||| |||||| || | Sbjct 520629 CTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCCGAGTGGATGTTCTCCATC 520688 Query 252148 AACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTG 252207 | | |||| | | || || |||||| || | | || || | ||| Sbjct 520689 ATGAGCTGGAAGCCGTAAAACGCACGCGCCTCCGGCACCTTCACGTCGCTCATGAAGCGC 520748 Query 252208 TTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTG 252267 | ||||| |||||| ||||| ||||| |||||||| || |||||| | || | | |||| Sbjct 520749 TCTGCAAGGTTCTCGATCACGATGCCGTCGCTGCCGGCGAAGAAGGCGAGCACGTGCTTG 520808 Query 252268 ATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGA 252327 |||||||| ||||| ||||||| ||| |||| |||||| ||||| | | | | Sbjct 520809 ATGAAGTGCCGCTCGCCGTCGTTCAGC--CTCAC-CCAGTCCTTCATGTC--GTTGCCAA 520863 Query 252328 GG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACA 252384 || | || |||| |||||||| | | || || ||||||| ||||| | | Sbjct 520864 GGTCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATG 520922 Query 252385 TCAGGGTACTTGATTGGGAA-AGCA 252408 ||||||||| |||| ||||| |||| Sbjct 520923 TCAGGGTACATGATCGGGAAGAGCA 520947 >seq14 Length=1309914 Score = 154 bits (170), Expect = 3e-32 Identities = 563/860 (65%), Gaps = 36/860 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||||| ||| ||||| | |||||||||||||||||| | || Sbjct 798387 TCAAAGAAGTTCGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAAGGGCTGCGTC 798328 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||||| || || | || | | |||||| ||||| ||||| | Sbjct 798327 ACGTTGTAGTGCTTCTCCAACCCCAGCGACACAAGCAGGCGGTCCGCCACGAACTCGATG 798268 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| || |||||||||||||||| || || | || || ||||| Sbjct 798267 TACTGCGCCATCAGCTCGGAGTTCATGCCAATCAGCCGCACCGGCAGCGCGTCGCAGATA 798208 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || ||| || || || ||| | | || || ||| | | | |||||| Sbjct 798207 AACTCGCGCTCGATGTTCACCGCGTCCACGATGATCTCCAGCACGCGCTCGCGCGACAGC 798148 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGA-GCTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| | || ||| || | || |||||| ||||||| Sbjct 798147 TTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGT--GTGCAGGCCCTCGT 798090 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| ||| | ||||||| | ||| || ||||||| |||||| ||| | |||| Sbjct 798089 CGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCCACGCTTCTTCAGCC 798030 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC----ACACACCCATGCA 251973 |||| | ||||| ||||| || ||||| | | |||||||| || ||| | Sbjct 798029 AGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGCAGCAAACC----CG 797974 Query 251974 ACAAGGCGCT-CAGCAA--ACGACTTGTCCTG-CGA-CAAGAACTTCTGTGCCCATGCTG 252028 | || |||| | | || || || | ||| ||| | | | | ||||| ||| Sbjct 797973 ATCAGCCGCTCCTGGAAGCTCGCCTCG--CTGCCGATCCATCGCACC---GCCCACTCTG 797919 Query 252029 CCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCAT-CA-AAGAGAGAG-TTCCGCTCGG 252085 ||||||| || ||||| || | || || | || ||| || ||| |||| Sbjct 797918 CCTTCTTCTGAATGCACGGGATCGTCTGAATCGCGTGCAGCAGACGCAGCTTCTCCTCG- 797860 Query 252086 CATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGT 252145 |||| |||| || || ||||| | |||||| ||||||| |||||| || Sbjct 797859 --CTGTCCGTGATGTACGTGTCCAGCAGCACCGAGTACGTCTCCGAGTGGATGTTCTCCA 797802 Query 252146 TGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGT 252205 | | || |||| | | ||||| |||||| || | | || || | ||| Sbjct 797801 TCATCAGCTGGAATCCGTAGAACGCACGCGCCTCCGGCACCTTCACGTCGCTCATGAAGC 797742 Query 252206 TGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCT 252265 | || | |||||| ||||| ||||| |||||||| || |||||| | || | | || Sbjct 797741 GCTGAGCGAGGTTCTCGATCACGATGCCGTCGCTGCCGGCGAAGAAGGCGAGCACGTGCT 797682 Query 252266 TGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCA 252325 |||||||||| ||||| ||||||| ||| | || |||||| ||||| | | Sbjct 797681 TGATGAAGTGCCGCTCGCCGTCGTTCAGC--GCCA-ACCAGTCCTTCATGTCGTTGCCAA 797625 Query 252326 GAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACA 252384 || | || |||| |||||||| | | || || ||||||| ||||| | | Sbjct 797624 GATCGATCTCCTCCAGCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATG 797566 Query 252385 TCAGGGTACTTGATTGGGAA 252404 ||| ||||| |||| ||||| Sbjct 797565 TCATGGTACATGATCGGGAA 797546 >seq24 Length=2960390 Score = 111 bits (122), Expect = 3e-19 Identities = 369/565 (65%), Gaps = 28/565 (5%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | ||||||||||||||||| ||||| || | || ||||| || Sbjct 908464 GACTTTGTGGACAAGGAGCTCATTCTCTTCTCCATCGCCGACTGC----GAGCGCAGCAT 908519 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || |||| | | || ||| ||||||| ||||| ||||||||||| ||| ||||| Sbjct 908520 CCCGAGCGCGATCGACGGCTTCAAGCCTGGCCAGCGCAAGATCCTCTTCGCCTGCTTCAA 908579 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||||| || | | || ||||| | ||| | | ||||| || ||||| || Sbjct 908580 GCGCAACCTCGTCAACGCCATCAAGGTGGTGCAGCTGGCGGGTTACGTGTCCGAGCACTC 908639 Query 218694 TGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||| ||||| |||| | | ||||| | || || |||||||| ||||| Sbjct 908640 CGCCTACCACCACGGCGAGCCGTCCCTCGTGCAG---ACGATCGTCGGCATGGCGCAGGA 908696 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || || ||||| |||||| | | || |||| || |||| ||||| ||| | || Sbjct 908697 CTTCGTAGGCAGCAACAACGT---CCCCCTCCTCCGCAAGGACGGACAGTTCGGTACGCG 908753 Query 218808 TCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTAC---AAAGTTGTCGCC 218864 ||| ||| || ||||| || ||| | || ||||| || | || || Sbjct 908754 TCTGCAGGGCGGCAAGGACCACGCCGCTGGGCGTTACATCTTCACGCGACTCATGCAGCT 908813 Query 218865 CGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGA 218924 ||| ||||||| | ||| | | ||||| || | ||| | |||| || ||||| Sbjct 908814 CGT-CCGCGCCA--TTTTCCACCCCGCCGACGACTTCCTCGTCGAGTACAAGGACGACGA 908870 Query 218925 TGG-TTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATG 218983 || ||| || | ||||| | || ||||||| ||||| | ||| || || | Sbjct 908871 CGGCCTCTCCG-TCGAGCCTTTCTTCTACGTGCCTGTGTTTCCGATGGCGCTGGTGAACG 908929 Query 218984 GTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTACAATCCCAAGGACA 219043 | || || ||||| || || || || || |||||| ||||| || | ||| | Sbjct 908930 GAACCTCCGGCATCGGCACGGGTTTTAGCACGACCATTCCCAACTACAACCCGATGGAGA 908989 Query 219044 TCATTGACAACGTCAAGCGTCTCAT 219068 || | |||||| | |||| || || Sbjct 908990 TCGTGGACAACCTGGAGCGGCTGAT 909014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027830768525178