Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq17 111 3e-19 seq92 102 2e-16 seq14 102 2e-16 >seq17 Length=1449266 Score = 111 bits (122), Expect = 3e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||||| |||||||| | || ||||| || ||||||||| | || || |||| Sbjct 520285 GAGTTCATCTGCGACGCGTTGCCGGTGCGGCTGATCGGCATGAACGCCGAGCTGATGGCG 520226 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 ||||||||||| ||||| || |||||| | | | |||| |||| |||||| ||| Sbjct 520225 CAGTACATCGAGTTCGTGGCGGACCGCCTGCTTGTGTCGCTCGGTTTGGAGAAACACTAC 520166 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 ||| | | | ||||| | ||| |||||| | || ||||| || || || || |||||| Sbjct 520165 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACAAACTTC 520106 Query 243712 TTCGAAAAG 243720 ||||| ||| Sbjct 520105 TTCGAGAAG 520097 >seq92 Length=13896 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || ||||| |||||||| | || ||||| || ||||||||| | || || |||| Sbjct 3081 GAGTTCATCTGCGACGCGTTGCCGGTGCGGCTGATCGGCATGAACGCCGAGCTGATGGCG 3022 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 |||||||| || ||||| || |||||| | | | |||| |||| ||||| ||| Sbjct 3021 CAGTACATTGAGTTCGTGGCGGACCGCCTGCTTGTGTCGCTCGGTTTGGAGAAGCACTAC 2962 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 ||| | | | ||||| | ||| |||||| | || ||||| || || || || |||||| Sbjct 2961 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGACGAACTTC 2902 Query 243712 TTCGAAAAG 243720 ||||| ||| Sbjct 2901 TTCGAGAAG 2893 >seq14 Length=1309914 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 243532 GAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGA 243591 || || || |||||||| | || ||||| |||||||||||||| || || |||| Sbjct 798203 GAGTTTATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACTCCGAGCTGATGGCG 798262 Query 243592 CAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTAC 243651 ||||||||||| ||||| || |||||| | | | |||| || | ||||| ||| Sbjct 798263 CAGTACATCGAGTTCGTGGCGGACCGCCTGCTTGTGTCGCTGGGGTTGGAGAAGCACTAC 798322 Query 243652 AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTC 243711 ||| | | | ||||| | ||| |||||| | || ||||| || || || || |||||| Sbjct 798323 AACGTGACGCAGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACTTC 798382 Query 243712 TTCGAAAAG 243720 || || ||| Sbjct 798383 TTTGAGAAG 798391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873528162300