Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq17 114 2e-20 seq92 111 2e-19 seq14 105 8e-18 >seq17 Length=1449266 Score = 114 bits (126), Expect = 2e-20 Identities = 159/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || |||| ||| || ||||| || || Sbjct 520385 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCC 520444 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || || ||||||||||| ||||| || Sbjct 520445 GCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGC 520504 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 |||||| | | || |||| | | ||| || || || | | ||| || ||| Sbjct 520505 AGCGAACCCGATCAGGCGCT---CCTGGAAGCTCGCCTCGCTGCCGATCCAACGCACCGC 520561 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| ||||| |||| || ||||||| ||||||||||| Sbjct 520562 CCACTCTGCCTTCTTCTGAATGCACGGGATTGTCTGGATCGC 520603 >seq92 Length=13896 Score = 111 bits (122), Expect = 2e-19 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || |||| ||| || ||||| || || Sbjct 3181 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCC 3240 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || || ||||||||||| ||||| || Sbjct 3241 GCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGC 3300 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||| | | || |||| | | ||| || || || | | ||| || ||| Sbjct 3301 AGCAAACCCGATCAGCCGCT---CCTGGAAGCTCGCCTCGCTGCCGATCCAACGCACCGC 3357 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| ||||| |||| || ||||||| ||||||||||| Sbjct 3358 CCACTCTGCCTTCTTCTGAATGCACGGGATCGTCTGGATCGC 3399 >seq14 Length=1309914 Score = 105 bits (116), Expect = 8e-18 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| || || || |||| ||| || ||||| || || Sbjct 798103 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCC 798044 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||||| |||||| | ||| || || || || ||||||||||| ||||| || Sbjct 798043 ACGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGC 797984 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||| | | || |||| | | ||| || || || | | ||| || ||| Sbjct 797983 AGCAAACCCGATCAGCCGCT---CCTGGAAGCTCGCCTCGCTGCCGATCCATCGCACCGC 797927 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 ||||| ||||| |||| || ||||||| ||||| ||||| Sbjct 797926 CCACTCTGCCTTCTTCTGAATGCACGGGATCGTCTGAATCGC 797885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350180150640