Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq24 185 9e-42 >seq24 Length=2960390 Score = 185 bits (204), Expect = 9e-42 Identities = 300/430 (70%), Gaps = 10/430 (2%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| ||||| || |||||||| || || ||| ||| |||||| ||||| ||||| Sbjct 299235 GCCACGCCGACGCTCTTCAACGCCGGCACGCCGAAGCCGCAGATGAGCTCGTGCTTCCTC 299294 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || || |||| ||| |||| ||| || | ||||| || ||||| || || Sbjct 299295 GTGGCGTCGAAGGAGGACAGCATCGACGGCATCTACGACACGCTGAAGGAGTGCGCCGTG 299354 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| ||| || || || ||||| | || ||| || | |||||| ||| | Sbjct 299355 ATCAGCAAAGCAGCTGGTGGCATCGGCCTGCACGTGCACAACATTCGTGCCGCGGGCAGC 299414 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| ||| || || || || || ||||| | || || ||||| || || |||||| Sbjct 299415 TACATCGCCGGCACGAACGGGACGTCGAACGGGTTGGTGCCGATGCTGCGCGTGTTCAAC 299474 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||| ||||||||||||||||| || || | | | ||||| | ||||| |||| Sbjct 299475 AACACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCATCTAC 299534 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTT--CATCGACCTGCGAAAG---AACCACG 94246 || ||||| |||||||| ||| | |||| | || |||| ||| ||| || Sbjct 299535 CTTGAGCCGTGGCACGCCGACAT-----CTTTGGCTTCCTGCTGCTGAAGCGCAACACCG 299589 Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 |||| ||| || | ||| | |||||||||||||| || ||||| || ||||| || | Sbjct 299590 GCAAGGATGACCAGCGTGCCCGCGACCTCTTCTACGCGCTGTGGGTCCCGGACCTCTTCA 299649 Query 94307 TGAAACGCGT 94316 |||| || || Sbjct 299650 TGAAGCGTGT 299659 Score = 129 bits (142), Expect = 6e-25 Identities = 208/292 (71%), Gaps = 14/292 (5%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| |||| || ||||| || ||||| ||| |||||||||| ||||||||| Sbjct 300426 AACTCCCTGCTGCTGGCGCCGATGCCAACCGCCTCGACGTCGCAGATCCTGGGCAACAAC 300485 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||| ||||||||||||||| | ||| | | || || || ||| || ||| Sbjct 300486 GAGTGCTTCGAGCCCTTCACCTCCAACATCTACGTCCGTCGTGTCCTGAGCGGCGAGTTC 300545 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGG--GGTGAC- 95265 || || | |||||| ||||| | |||||| | | || ||||| | ||| Sbjct 300546 CCTGTGGTGAACAAGTACCTCGTGATGGACCTCATCAAGCGCGGACTGTGGAACGAGACG 300605 Query 95266 AAGGTCAA-GA-ACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATC--CCGCAAAT 95321 | | ||| || | || || ||| |||||| ||||| | | |||| | || || Sbjct 300606 ATGCGCAACGAGATCATCTCCTA-----CAACGGGTCCGTTCTGTCCATCGACAGC--AT 300658 Query 95322 ACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGC 95373 || || ||| | |||| ||| ||| |||||||||||||||||||||||| Sbjct 300659 CCCTGATGACCTGAAGGAGCTATACCGCACCGTGTGGGAGATCCCGCAGCGC 300710 Score = 120 bits (132), Expect = 3e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAAC 94539 ||| | ||||| || ||||| |||| | | ||||||| | |||| |||||| ||| Sbjct 299823 CAGATCGAGACAGGCGTGCCCTTCATCCTCTACAAGGACGCGTGCAACAGCAAGTCGAAC 299882 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 ||| || ||||||| |||||| ||||||| |||||||||||||| ||||||| || Sbjct 299883 CAGAAGAACCTCGGCACCATCAAGTGCTCGAACCTGTGCACCGAGATCGTCGAGTTCACG 299942 Query 94600 TCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 || ||||| |||| || ||||| ||||| | ||||||| Sbjct 299943 TCGCCGGAGGAGACGGCGGTGTGCAACCTCGCCTCCATC 299981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720367709680