Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq24 91.5 1e-13 seq20 89.7 5e-13 >seq24 Length=2960390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 264/403 (66%), Gaps = 5/403 (1%) Strand=Plus/Plus Query 122929 TGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACCGAAACTTACGATT 122988 |||| || ||| | ||| | |||| ||||| | | |||| ||| || ||| | Sbjct 299149 TGCGTGTTGCTCTCGGCATCCACGTCGGCGACCTGAAGAACGTCCGCGAGACGTACAACC 299208 Query 122989 TGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGT 123048 | ||||| | || ||||| ||||| | || || | ||| |||||||||| | Sbjct 299209 TCATGTCGAAGGGCTTCTTCACCCACGCCACGCCGACGCTCTTCAACGCCGGCACGCCGA 299268 Query 123049 TGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCT 123108 ||| ||| || ||||| || | | | | | || ||||||||| ||| |||| Sbjct 299269 AGCCGCAGATGAGCTCGTGCTTCCTCGTGGCGTCGAAGGAGGACAGCATCGACGGCATCT 299328 Query 123109 ATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACG 123168 | || || || || ||||| |||| |||| | || ||||| ||| || ||| Sbjct 299329 ACGACACGCTGAAGGAGTGCGCCGTGATCAGCAAAGCAGCTGGTGGCATCGGCCTGCACG 299388 Query 123169 TGCACGACGTAAGAGGCCGCGGA-AGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGG 123227 ||||| || | | | |||||| ||| |||| |||| |||| | | |||| Sbjct 299389 TGCACAACATTCGTG-CCGCGGGCAGCTACATCGCCGGCACGAACGGGACGTCGAACGGG 299447 Query 123228 CTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC--- 123284 | | | |||||||| || | ||| ||| | | || |||| |||||||||||| Sbjct 299448 TTGGTGCCGATGCTGCGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCGGT 299507 Query 123285 AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACG 123327 || ||||| ||||| | || ||||| || || |||||||||| Sbjct 299508 AAGCGCAAGGGCGCCTTCGCCATCTACCTTGAGCCGTGGCACG 299550 >seq20 Length=1996037 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || ||| || |||||||| || ||||| ||||| || || || Sbjct 1271116 ATGCCACCGCGCAGGCGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCC 1271175 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || |||| || || || || | |||| || ||||||||||| Sbjct 1271176 GCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGG 1271235 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || ||||| || || || || | || | || | |||||| | ||| Sbjct 1271236 GGAATGCCCTCCTTATCCTGGATCTTCGCCTTCA-CGTTCTCGATCGTGTCGCTCGCCTC 1271294 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| | | ||| |||||||| || || || ||||| || ||||| Sbjct 1271295 GACCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 1271345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452000612281680