Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq24 188 9e-43 seq17 109 7e-19 seq92 105 8e-18 seq14 96.9 4e-15 >seq24 Length=2960390 Score = 188 bits (208), Expect = 9e-43 Identities = 878/1373 (64%), Gaps = 47/1373 (3%) Strand=Plus/Minus Query 115841 TGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCA 115900 |||| ||| |||||||| ||| || || ||| ||||| || ||| || | | Sbjct 300579 TGAGGTCCATCACGAGGTACTTGTTCACCACAGGGAACTCGCCGCTCAGGACACGACGGA 300520 Query 115901 GATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGG 115960 |||||||||| ||| | ||||| |||||||| ||||| |||| ||| || | || | Sbjct 300519 CGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGACGTCG 300460 Query 115961 AGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT 116020 |||| || ||||| || |||| || ||| |||||| | || ||| | | | | Sbjct 300459 AGGCGGTTGGCATCGGCGCCAGCAGCAGGGAGTTGCGCATGCCGACCTGCATCACCTTCT 300400 Query 116021 CCTTGAGGGCGTCCCAGTCGTA------GTTGAGCTTTGTCTCCCC---CTCCCACATAT 116071 |||| ||| ||||||||| | | || || | | | | || |||||| | Sbjct 300399 CCTTCAGGCTGTCCCAGTCCCACCGCCCGCTG---TTCGGCCGCGCGTTCTTCCACATGT 300343 Query 116072 CAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAA 116131 | |||||||| || || | | ||| || |||| || ||||| || ||||| || Sbjct 300342 CGAACTGGAGAATGCCCTCGCTCGCCGGGCTGCCCTTGAAGGTCTCGTAGGGGCCTTCCT 300283 Query 116132 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG--CG 116189 ||| ||| | || |||||||| || ||| || || ||||| ||||| || Sbjct 300282 CCTTCGCTATCTCCATCGACGCCTCGACCGCCGCGAAGTAGATCGTCTCGAAAATCTCCG 300223 Query 116190 AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATC 116249 || |||| || |||||| | | || | || ||| || ||| || | || Sbjct 300222 AG--TTCACCTTCTGCGCCTCGGCACTGACGAAGGGCAGGCGGAGCAGAATGAAGGCGTC 300165 Query 116250 CGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGT 116309 || | ||| || || |||||||| | ||||| | | ||| || || || || Sbjct 300164 GGCCAAACCCTGCACGCCGAGGCCGACCGGGCGGTTGCGCATGTTGCTGCGCCGCGCCGT 300105 Query 116310 CTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGT 116369 ||| || || || | || | ||| || || | || || || ||||| ||| || Sbjct 300104 CTCGACCGGGTAGTAGTTGCGATCAATGACACGGTTGAGGTTGCGGGTGATCTGCTTCGT 300045 Query 116370 GATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 116429 || | ||| | || || || ||| |||| || ||||| | || | Sbjct 300044 GACGGTGTAGAGCAGCTGGTGGTCGAACTCGCGCTTCTCCTCGTTGACGAAGCGCGGCAA 299985 Query 116430 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 116489 ||||| || || || || ||||| | ||||| ||| ||| |||| | || || Sbjct 299984 CGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCCGGCGACGTGAACTCGACGATCTC 299925 Query 116490 CGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 116549 || |||| || || | ||| |||||||| | |||||| || || ||||| |||| || Sbjct 299924 GGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCA 299865 Query 116550 CGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 116609 ||| ||||||||||| || | ||| || ||||| | || |||| ||| || || Sbjct 299864 CGCGTCCTTGTAGAGGATGAAGGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAA 299805 Query 116610 CCATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 ||| || | | ||| |||| | || | | || ||||| ||||||| || Sbjct 299804 CCACACCTCCTGCGCCTGG-AGGGTCTGCACGCCGCGGCCCTCGGCCTCGTAGCGCTCGT 299746 Query 116669 AGAGGGCCTCAAACTCTTCACC--CACAGCCTCTGAGAGCC---CTGGTGCCTTATCTGG 116723 ||||| ||| |||||||| || ||| | ||||| || | ||||| || || Sbjct 299745 AGAGGCGCTCGAACTCTTCGCCGTAGCAGTCGCTGAGCCCCGGGCAGGTGC----TCGGG 299690 Query 116724 ACAGAAGAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 | | || | ||| || || | ||| || || ||||||||||||||||| |||| || Sbjct 299689 TC-CATCAGCGTCCACTTCCCCTCGCTCTTC-ACACGCTTCATGAAGAGGTCCGGGACCC 299632 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAA 116840 | ||||| ||||||| || || || ||| || || | || ||| | || Sbjct 299631 ACAGCGCGTAGAAGAGGTCGCG--GGCACGCTGGTCATCCTTGCCGGTGTTGCGCTTCAG 299574 Query 116841 CTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTT 116900 | || ||| | | ||| || ||||||||||| || ||||| | |||| | ||||| Sbjct 299573 CAGCAGGAAGCCAAAGATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTT 299514 Query 116901 GCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGG 116957 ||| || || |||||| || || | ||||| ||| || ||||| ||||| || Sbjct 299513 GCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGG 299454 Query 116958 AATGATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACAT 117016 | | || | || || || || || ||| | | | ||| | | | Sbjct 299453 CACCAACCCGTTCGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCCG-CGGCACGAATGT 299395 Query 117017 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTG-AGATTTGTGCGCACTCCGTGAGA 117075 ||| | ||||| || || || || | | ||||| ||| ||||||||| | || Sbjct 299394 TGTGCACGTGCAGGCCGATGCCACCAG-CTGCTTTGCTGATCACGGCGCACTCCTTCAGC 299336 Query 117076 CTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGC---AGCTCGAC 117132 || ||||||| || ||||| ||| |||| || | |||||||| |||| | Sbjct 299335 GTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACGAGGAAGCACGAGCT---C 299279 Query 117133 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 || || ||| | || || || ||||||||||| || || || |||||| |||| Sbjct 299278 ATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGGGTGAA 299226 >seq17 Length=1449266 Score = 109 bits (120), Expect = 7e-19 Identities = 343/530 (65%), Gaps = 16/530 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| ||||||||||||||||||||| || | || ||| ||||||| Sbjct 520082 GTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATCATCTCCAT 520141 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 || || || || | | | ||| | | | || || | | || || || Sbjct 520142 GAAGTCGAAGGGCTGCGTCACGTTGTAGTGTTTCTCCAAACCGAGCGACACAAGCAGGCG 520201 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 |||| ||| |||| ||||||| | |||| ||| | |||||| ||||| || Sbjct 520202 GTCCGCCACGAACTCGATGTACTGCGCCATCAGCTCGGCGTTCATGCCGATCAGCCGCAC 520261 Query 127411 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTG 127470 || | |||||| |||||||| | ||| |||| ||| || ||| | | ||| | | Sbjct 520262 CGGCAACGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAGAATGATCTCCAG 520321 Query 127471 AATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA-------- 127522 | | | | | | | || ||| | | || ||||| |||||| Sbjct 520322 CAC-GCGCTCGCGCGACAGCTTGTGCTTGATGTGC----GAGTTGTACAGCAGGCACGCG 520376 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| || |||||||| || ||||| || || || |||| ||| || ||| Sbjct 520377 AAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGC 520436 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 || || || |||||||||| |||||| | ||| || || || || ||||||||||| ||| Sbjct 520437 ATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGCCC 520496 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || || |||||| | | || |||| | | ||| | || | | | ||| Sbjct 520497 TCGACGGCAGCGAACCCGATCAGGCGCT---CCTGGAAGCTCGCCTCGCTGCCGATCCAA 520553 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 || |||||||| |||||| |||| || || |||| ||||||||||| Sbjct 520554 CGCACCGCCCACTCTGCCTTCTTCTGAATGCACGGGATTGTCTGGATCGC 520603 >seq92 Length=13896 Score = 105 bits (116), Expect = 8e-18 Identities = 347/536 (65%), Gaps = 30/536 (6%) Strand=Plus/Plus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || ||| ||||||||||||||| ||||| || | ||| ||| ||||||| Sbjct 2879 TACTCGCCCACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGGAGCGAGATCATCTCCATG 2938 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACC-CCAATCTGTTTGA-----G 127344 || || || || | | | || |||| | || | |||| | | || | Sbjct 2939 AAGTCGAAGGGCTGCGT-------CACGTTGTAGTGCTTCTCCAAACCGAGCGACACAAG 2991 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 || || |||| ||| |||||||||||| | |||| ||| | |||||| ||||| || Sbjct 2992 CAGGCGGTCCGCCACGAACTCAATGTACTGCGCCATCAGCTCGGCGTTCATGCCGATCAG 3051 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 || | |||||| |||||||| | ||| |||| ||| || ||| | | ||| Sbjct 3052 CCGCACCGGCAACGCGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAGAATGAT 3111 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA-- 127522 | | | | | | | | | || ||| | | || ||||| |||||| Sbjct 3112 CTCCAGCAC-GCGCTCGCGCGACAGCTTGTGCTTGATGTGC----GAGTTGTACAGCAGG 3166 Query 127523 ------AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 || || ||| || |||||||| || ||||| || || || |||| ||| Sbjct 3167 CACGCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGC 3226 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || ||||| || || |||||||||| |||||| | ||| || || || || ||||||||| Sbjct 3227 CCCGGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAG 3286 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA 127696 || ||||| || || ||| | | || |||| | | ||| | || | | Sbjct 3287 ATGCCCTCGACGGCAGCAAACCCGATCAGCCGCT---CCTGGAAGCTCGCCTCGCTGCCG 3343 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 | ||| || |||||||| |||||| |||| || || |||| ||||||||||| Sbjct 3344 ATCCAACGCACCGCCCACTCTGCCTTCTTCTGAATGCACGGGATCGTCTGGATCGC 3399 >seq14 Length=1309914 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || |||||||| || ||||| || || || |||| ||| || ||||| || || Sbjct 798103 GTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCC 798044 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| | ||| || || || || ||||||||||| ||||| || Sbjct 798043 ACGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGC 797984 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || ||| | | || |||| | | ||| | || | | | ||| || ||| Sbjct 797983 AGCAAACCCGATCAGCCGCT---CCTGGAAGCTCGCCTCGCTGCCGATCCATCGCACCGC 797927 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| |||||| |||| || || |||| ||||| ||||| Sbjct 797926 CCACTCTGCCTTCTTCTGAATGCACGGGATCGTCTGAATCGC 797885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503687671280