Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq92 147 3e-30 seq17 145 1e-29 seq24 138 2e-27 >seq92 Length=13896 Score = 147 bits (162), Expect = 3e-30 Identities = 298/437 (68%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| | || || |||||||| |||| Sbjct 2887 CACCTTCTTCTCGAAGAAGTTCGTCTTGCCCTGGAGCGAGATCATCTCCATGAAGTCGAA 2946 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| ||||| || ||||| | | | |||| | ||| ||||| Sbjct 2947 GGGCTGCGTCACGTTGTAGTGCTTCTCCAAACCGAGCGACACAAGCAGGCGGTCCGCCAC 3006 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || || ||||| || | |||| |||| ||| || || | ||||| || || | || Sbjct 3007 GAACTCAATGTA-CTGCGCCATCAGCTCGGCGTTCATGCCGATCAGCCGCACCGGCAACG 3065 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 3066 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAGAATGATCTCCAGCACGCGCT 3125 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||| ||||| ||||| Sbjct 3126 CGCGCGACAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGTGTGCA 3185 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | | || |||||||| | ||| ||| Sbjct 3186 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCCGCGCT 3245 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| ||| | ||| || ||||| ||||| ||||| ||| Sbjct 3246 TCTTCAGCCAGAACA-GCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGCAGCA 3304 Query 160061 AACGCCACGAGCCTCTC 160077 ||| | | |||| ||| Sbjct 3305 AACCCGATCAGCCGCTC 3321 >seq17 Length=1449266 Score = 145 bits (160), Expect = 1e-29 Identities = 289/423 (68%), Gaps = 4/423 (1%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| ||||| |||||||||| || || || |||||||| |||| Sbjct 520091 CACCTTCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATCATCTCCATGAAGTCGAA 520150 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || | | |||||| ||| | ||| || ||||| | | | |||| | ||| ||||| Sbjct 520151 GGGCTGCGTCACGTTGTAGTGTTTCTCCAAACCGAGCGACACAAGCAGGCGGTCCGCCAC 520210 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 || |||||||| || | |||| |||| ||| || || | ||||| || || | || Sbjct 520211 GAACTCGATGTA-CTGCGCCATCAGCTCGGCGTTCATGCCGATCAGCCGCACCGGCAACG 520269 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTT 159881 | || | | ||||| ||| || | ||||| || | |||| | || || | Sbjct 520270 CGTCGCAGATGAACTCGCGCTCGATGTTCACCGCGTCCAGAATGATCTCCAGCACGCGCT 520329 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCA 159941 || | | ||||| | ||||| || |||| |||||||| ||||| ||||| Sbjct 520330 CGCGCGACAGCTTGTGCTTGATGTGCGAGTTGTACAGCAGGCACGCGAAGTCCGTGTGCA 520389 Query 159942 GTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCG 160001 | |||||||| || ||||| | ||||||| | | | || |||||||| | ||| ||| Sbjct 520390 GGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCCGGCATCAGCCCGCGCT 520449 Query 160002 GTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || | | |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 520450 TCTTCAGCCAGAACA-GCGCGCAGAAGGACCCGGAGAAGAAGATGCCCTCGACGGCAGCG 520508 Query 160061 AAC 160063 ||| Sbjct 520509 AAC 520511 >seq24 Length=2960390 Score = 138 bits (152), Expect = 2e-27 Identities = 494/759 (65%), Gaps = 10/759 (1%) Strand=Plus/Minus Query 204841 GGCGGCCAGATTGCACACCGCGGGTCTG-TGTGGCTCGCTCACCTCCACGATCTCGGTGC 204899 || ||| || ||||||||||| | ||| | ||| | | ||| ||||||||||||| Sbjct 299978 GGAGGCGAGGTTGCACACCGCCG-TCTCCTCCGGCGACGTGAACTCGACGATCTCGGTGC 299920 Query 204900 ACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGT 204959 ||| ||| |||||| | || | | || |||||| ||||||| ||| || | || Sbjct 299919 ACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCGT 299860 Query 204960 CCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCAC 205018 ||||||| | ||||| |||| || |||| ||||| || ||| || ||| | |||| Sbjct 299859 CCTTGTAGAGGATGAAGGGCACGCCTGTCTCGATCTGCGACTCG-AGGATGGCGAACCAC 299801 Query 205019 AATTCGCGAGCCTCCACTTGCTTCACGTA-CATCCCTTGAGACTCGTATTTTGTGTACAG 205077 | || | |||| | || |||| | |||| | | |||||| ||| || Sbjct 299800 ACCTCCTGCGCCTGGAGGGTCTGCACGCCGCGGCCCTCG-GCCTCGTAGCGCTCGTAGAG 299742 Query 205078 CGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAG 205137 | | || || ||||| ||| | ||||| || || | | || |||||| Sbjct 299741 GCGCTCGAACTCTTCGCCGTAGCAGTCGCTGAGCCCCGGGCAGGTGCTCGGGTCCATCAG 299682 Query 205138 AGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTA 205197 | |||| || ||| ||||| | || ||| || ||||| || |||||| |||| Sbjct 299681 CGTCCACTTCCCCTCGCTCTTCACACGCTTCATGAAGAGGTCCGGGACCCACAGCGCGTA 299622 Query 205198 AAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGC 205257 || || || ||||| | | || | || ||| |||| ||| |||| Sbjct 299621 GAAGAGGTCGCGGGCACGCTGGTCATCCTTGCCGGTGTTGCGCTTCAGCAGCAGG-AAGC 299563 Query 205258 CGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCC 205316 | | |||||||||||||||||||| | | | ||| | ||||| | ||| | Sbjct 299562 CAAAGATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCGCTTACCGC 299503 Query 205317 CACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGT 205376 | ||||||||||| ||| | | | |||||| || |||||||||||||||| |||| Sbjct 299502 CGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAACCCGT 299443 Query 205377 TGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCG 205436 | | ||||||||||||| | |||| ||| | || | | |||| | | | Sbjct 299442 TCGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCCGCGGCACGAATGTTGTGCACGTGCA 299383 Query 205437 CGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGC 205496 ||| || || |||| ||| |||| ||||||||| | ||| ||| |||||||| Sbjct 299382 GGCCGATGCCACCAGCTGCTTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTAGATGC 299323 Query 205497 CTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCAAAGTTG 205555 | ||||| || ||| | | ||| || ||||||| || || ||| | Sbjct 299322 CGTCGATGCTGTCCTCCTTCGACGCCACGAGGAAGCACGAGCTCATCTGCGGCTTCG-GC 299264 Query 205556 GTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 ||||| |||| ||||||||| || |||||||| ||||| Sbjct 299263 GTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGGGTGAAG 299225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795150647736480