Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq331 158 1e-33 seq21 154 2e-32 seq26 149 7e-31 seq20 145 9e-30 >seq331 Length=20977 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 8083 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 8142 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | || | || ||||||| Sbjct 8143 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 8202 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||||||||| | ||||| |||| || |||| Sbjct 8203 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATG 8262 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || || ||||| ||||| Sbjct 8263 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 8297 >seq21 Length=2191012 Score = 154 bits (170), Expect = 2e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 977220 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 977279 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || |||| |||||||||||| | || | || |||||||||| Sbjct 977280 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 977339 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 977340 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 977399 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 977400 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 977429 Score = 154 bits (170), Expect = 2e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 977448 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 977507 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || |||| |||||||||||| | || | || |||||||||| Sbjct 977508 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 977567 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 977568 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 977627 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 977628 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 977657 Score = 154 bits (170), Expect = 2e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 977676 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 977735 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || |||| |||||||||||| | || | || |||||||||| Sbjct 977736 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 977795 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 977796 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 977855 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 977856 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 977885 Score = 154 bits (170), Expect = 2e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 977904 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 977963 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || |||| |||||||||||| | || | || |||||||||| Sbjct 977964 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 978023 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 978024 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 978083 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 978084 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 978113 Score = 154 bits (170), Expect = 2e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 978132 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 978191 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || |||| |||||||||||| | || | || |||||||||| Sbjct 978192 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 978251 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 978252 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 978311 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 978312 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 978341 Score = 154 bits (170), Expect = 2e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 978360 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 978419 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||| || |||| |||||||||||| | || | || |||||||||| Sbjct 978420 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 978479 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 978480 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 978539 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 978540 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 978569 Score = 154 bits (170), Expect = 2e-32 Identities = 164/215 (76%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 978816 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 978875 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 978876 CAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 978935 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 978936 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 978995 Query 46564 GCCCGTCAGCGTTTTAAC-AAAGATTTGCATTTTG 46597 ||| |||||||| || || |||||| ||||||||| Sbjct 978996 GCCGGTCAGCGTCTTCACGAAAGATCTGCATTTTG 979030 Score = 149 bits (164), Expect = 7e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 976992 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 977051 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 977052 CAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 977111 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 977112 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 977171 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 977172 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 977201 Score = 149 bits (164), Expect = 7e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 978588 CACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTC 978647 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| |||||||||||| | || | || |||||||||| Sbjct 978648 CAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 978707 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||||| ||| | || | | ||||||||| | ||||| |||| || |||||| || Sbjct 978708 GATCTTCGCCTTCACGTTCTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTT 978767 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||||||| || || ||||| ||||| Sbjct 978768 GCCGGTCAGCGTCTTCACGAAGATCTGCAT 978797 >seq26 Length=613868 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 365970 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 366029 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | || | || ||||||| Sbjct 366030 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 366089 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||||||||||| || || || | | ||| Sbjct 366090 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGATC 366149 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||||||||| || || ||||| ||||| Sbjct 366150 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 366184 >seq20 Length=1996037 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 1271131 CGCAGCACGAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCC 1271190 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||||||||| || |||| |||||||||||| | || | || |||||| Sbjct 1271191 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTA 1271250 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||||||||||| || || || | | ||| Sbjct 1271251 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGATC 1271310 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| |||||||| || |||||||| ||||| Sbjct 1271311 GTCTTGCCGGTCAGCGTCTTCACAAAGATCTGCAT 1271345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235164010160