Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq92 105 8e-18 seq17 105 8e-18 seq24 102 1e-16 seq14 102 1e-16 >seq92 Length=13896 Score = 105 bits (116), Expect = 8e-18 Identities = 184/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 102054 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 102113 |||| ||| || | ||| | | ||||||| || || | | || ||||| || | Sbjct 3444 GACACGTACATCACGGACAGCGAGGAGAAGATGCGTCTGCTGCACGCGATCCAGACGATC 3385 Query 102114 CCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 102173 || || ||||| ||||| || || ||||| || ||| | | | || || | | Sbjct 3384 CCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGCAGCGAGGCGAG---C 3328 Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || ||||| || ||| ||||| || ||||| ||||||||||| || |||||| Sbjct 3327 TTCCAGGAGCGGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTC 3268 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| | | ||||| |||||||| || || ||||| || || |||| ||||||| Sbjct 3267 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACCTTCAGCAACGAG 3208 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||| || |||||||| || ||| Sbjct 3207 CTGATCTCGCGCGACGAGGGCCTGCAC 3181 >seq17 Length=1449266 Score = 105 bits (116), Expect = 8e-18 Identities = 184/267 (69%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 102054 GACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTT 102113 |||| ||| || | ||| | | ||||||| || | | | | || ||||| ||| | Sbjct 520648 GACACGTACATCACGGACAGCGAGGAGAAGATGCGGTTGCTGCACGCGATCCAGACAATC 520589 Query 102114 CCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCC 102173 || || ||||| ||||| || || ||||| || ||| | | | || || | | Sbjct 520588 CCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGCAGCGAGGCGAG---C 520532 Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || ||||| || ||| || || || ||||| ||||||||||| || |||||| Sbjct 520531 TTCCAGGAGCGCCTGATCGGGTTCGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTC 520472 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| | | ||||| |||||||| || || ||||| || || |||| ||||||| Sbjct 520471 TGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACCTTCAGCAACGAG 520412 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||| || |||||||| || ||| Sbjct 520411 CTGATCTCGCGCGACGAGGGCCTGCAC 520385 >seq24 Length=2960390 Score = 102 bits (112), Expect = 1e-16 Identities = 351/535 (66%), Gaps = 13/535 (2%) Strand=Plus/Plus Query 111933 CCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGC 111989 || ||||| ||||| || ||| ||| || ||||| || |||| | || || ||| Sbjct 299454 CCGATGCTGCGCGTGTTCAACAACACGGCCCGCTACGTGGACCAGGGCGGCGGTAAGCGC 299513 Query 111990 AAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAG 112049 ||||| | |||| |||| |||||||| |||||||| || ||| | | ||||| | Sbjct 299514 AAGGGCGCCTTCGCCATCTACCTTGAGCCGTGGCACGCCGACATCTTTGGCTTCCTGCTG 299573 Query 112050 TTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGG 112109 || | |||| || | || || ||| |||||| ||||||| ||| || ||| Sbjct 299574 CTGAAGCGCAACACCGGCAAGGATGACCAGCGTGCCCGCGACCTCTTCTACGCGCTGTGG 299633 Query 112110 ATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG-TGGCAATTGGTCTCTCTTTTGTCC 112168 | || || |||||||||||| | | ||| ||| | || || ||| | || | | || Sbjct 299634 GTCCCGGACCTCTTCATGAAGCGTG-TGAAGAGCGAGGGGAAGTGGACGCT-GATGGACC 299691 Query 112169 AGA-CAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAA 112227 || || || || ||| ||| | || || ||||| || ||||||| Sbjct 299692 CGAGCACCTGCCCGGGGCTCAGCGACTGCTACGGCGAAGAGTTCGAGCGCCTCTACGAGC 299751 Query 112228 AGTACGAGGAAGAAAGTCG-GGCGACTGC-GACGGTGCCAGCTGC-CGATGTGTGGAAAG 112284 ||||||| || | || |||| ||| ||| | |||| || || |||||| | Sbjct 299752 GCTACGAGGCCGAGGGCCGCGGCG--TGCAGACCCT-CCAGGCGCAGGAGGTGTGGTTCG 299808 Query 112285 CTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTA 112344 | || ||| |||| || | |||||| || || | || || ||||| ||||| || | Sbjct 299809 CCATCCTCGAGTCGCAGATCGAGACAGGCGTGCCCTTCATCCTCTACAAGGACGCGTGCA 299868 Query 112345 ACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAA 112404 || ||| || || ||||| | || |||||| | || ||||| || || || | Sbjct 299869 ACAGCAAGTCGAACCAGAAGAACCTCGGCACCATCAAGTGCTCGAACCTGTGCACCGAGA 299928 Query 112405 TCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGC 112459 || | || || || || |||||||| ||||| |||||||| || ||||| Sbjct 299929 TCGTCGAGTTCACGTCGCCGGAGGAGACGGCGGTGTGCAACCTCGCCTCCATCGC 299983 >seq14 Length=1309914 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || ||| ||||| || ||||| ||||||||||| || ||||||||||| Sbjct 797963 GAGCGGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTCTGCGCG 798022 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 | | ||||| |||||||| || || ||||| || || |||| ||||||||| ||| Sbjct 798023 CTGTTCTGGCTGAAGAAGCGTGGGCTGATGCCGGGGCTGACCTTCAGCAACGAGCTGATC 798082 Query 102300 TCTCGTGACGAGGGACTCCAC 102320 || || |||||||| || ||| Sbjct 798083 TCGCGCGACGAGGGCCTGCAC 798103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738846249760