Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq24 116 4e-21 seq7 93.3 5e-14 seq17 91.5 2e-13 seq92 89.7 6e-13 seq14 89.7 6e-13 seq21 82.4 9e-11 seq18 82.4 9e-11 seq4 82.4 9e-11 >seq24 Length=2960390 Score = 116 bits (128), Expect = 4e-21 Identities = 543/846 (64%), Gaps = 17/846 (2%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 ||||| || || | ||||| || |||||||| ||| ||| |||| | || || Sbjct 299983 GCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCCGGCGACGTGAACTCGACGATCTCG 299924 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 || |||| ||| || | ||| || || || | ||||| ||||| ||| |||||||| Sbjct 299923 GTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCAC 299864 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTC 106642 || ||||||||||| ||| ||||| || ||||| |||| |||| ||| || || | Sbjct 299863 GCGTCCTTGTAGAGGATGAAGGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAAC 299804 Query 106643 CACACAT-CGGCGGCTGGTACAATGGC-GTTGGCC-CGTCCCTCCGCCTCGTACTTTGTG 106699 ||||| | | ||| |||| | | | | ||| || ||||| |||||||| | Sbjct 299803 CACACCTCCTGCGCCTGG---AGGGTCTGCACGCCGCGGCCCTCGGCCTCGTAGCGCTCG 299747 Query 106700 TAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG-TCTGGACA 106758 |||||| || ||||| || || |||| ||| || || || || || | Sbjct 299746 TAGAGGCGCTCGAACTCTTCGCCGTAGCAGTCGCTGAGCCCCGGGCAGGTGCTCGGGTC- 299688 Query 106759 GAAAAGAGACCA-TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 106817 | || | ||| || || | ||| || || ||||||||||| ||||| || | ||||| Sbjct 299687 CATCAGCGTCCACTTCCCCTCGCTCTTC-ACACGCTTCATGAAGAGGTCCGGGACCCACA 299629 Query 106818 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 106877 | | | ||||| || | || || || | || |||| | | | | Sbjct 299628 GCGCGTAGAAGAGGTCGCGGGCACGCTGGTCATCCTTGCCGGTGTTGCGCTTCAGCAGCA 299569 Query 106878 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG-- 106935 |||| | | ||| || |||||||| |||||||| |||| |||| | ||||| || Sbjct 299568 GGAAGCCAAAGATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCGCT 299509 Query 106936 -ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 106994 || || | || | || ||||| || ||| ||| || ||||| ||||| || | | Sbjct 299508 TACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCA 299449 Query 106995 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATCATGG 107053 || | || || || || || || || | ||| | | | || Sbjct 299448 ACCCGTTCGACGTCCCGTTCGTGCCGGCGAT-GTAGCTGCCCGCGGCACGAATGTTGTGC 299390 Query 107054 ATGTGCATCCCAATACCCCCAGCCCACTTTG-AGATTTGCGCACACTCCGTAAGAGTTCC 107112 | ||||| || || || |||| | ||||| ||| || |||||| | || || | Sbjct 299389 ACGTGCAGGCCGATGCCACCAG-CTGCTTTGCTGATCACGGCGCACTCCTTCAGCGTGTC 299331 Query 107113 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 107172 ||||| |||| ||| ||||||||| || | |||||||| | ||||||||| Sbjct 299330 GTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACGAGGAAGCACGAGCTCATCTGCGG 299271 Query 107173 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACAT 107232 | || || || || |||||||| || || || ||||| |||| | || | ||||| Sbjct 299270 CTTCGGCGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGGGTGAAGAAGCCCTTCGACAT 299211 Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292 || ||| ||||| ||| | | ||| | |||||||||||| || ||||| Sbjct 299210 GAGGTTGTACGTCTCGCGGACGTTCTTCAGGTCGCCGACGTGGATGCCGAGAGCAACACG 299151 Query 107293 CATAAA 107298 || ||| Sbjct 299150 CAGAAA 299145 >seq7 Length=814463 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||||||| ||||||||||||||||||||| ||||| ||||| |||| Sbjct 236254 GCTCCTATAGTGTAGTGGTTATCACTTTGGACTTTGAATCCGGAAACCCAGGTTCGAATC 236195 Query 136224 CAGGTAGGAGC 136234 | ||||||||| Sbjct 236194 CTGGTAGGAGC 236184 >seq17 Length=1449266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/254 (68%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || ||| ||| || ||||| || || || || || || || |||| || || Sbjct 520374 GCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCC 520433 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | |||||||| ||||||||||||||||| Sbjct 520434 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATG 520493 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 ||||| || || ||| | | |||||||| || ||| | || || | | | Sbjct 520494 CCCTCGACGGCAGCGAACCCGATCAGGCGCTCCTGGA---AGCTCGCCTCGCTGCCGATC 520550 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAAT 117513 || || ||||| | |||||||||| ||| || || | || ||||| || | | Sbjct 520551 CAACGCACCGCCCACTCTGCCTTCTTCTGAATGCACGGGATTGTCTGGATCGCGTGCAGC 520610 Query 117514 AACTGCTTCTTTTC 117527 ||| || |||| || Sbjct 520611 AACCGCATCTTCTC 520624 >seq92 Length=13896 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || ||| ||| || ||||| || || || || || || || |||| || || Sbjct 3170 GCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCC 3229 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | |||||||| ||||||||||||||||| Sbjct 3230 GGCATCAGCCCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATG 3289 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 ||||| || |||||| | | || ||||| || ||| | || || | | | Sbjct 3290 CCCTCGACGGCAGCAAACCCGATCAGCCGCTCCTGGA---AGCTCGCCTCGCTGCCGATC 3346 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 || || ||||| | |||||||||| ||| || || | || ||||| || Sbjct 3347 CAACGCACCGCCCACTCTGCCTTCTTCTGAATGCACGGGATCGTCTGGATCGC 3399 >seq14 Length=1309914 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || ||| ||| || ||||| || || || || || || || |||| || || Sbjct 798114 GCGAAGTCCGTGTGCAGGCCCTCGTCGCGCGAGATCAGCTCGTTGCTGAAGGTCAGCCCC 798055 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||||| ||| | | |||||||| ||||||||||||||||| Sbjct 798054 GGCATCAGCCCACGCTTCTTCAGCCAGAACAGCGCGCAGAAGGACCCGGAGAAGAAGATG 797995 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 ||||| || |||||| | | || ||||| || ||| | || || | | | Sbjct 797994 CCCTCGACGGCAGCAAACCCGATCAGCCGCTCCTGGA---AGCTCGCCTCGCTGCCGATC 797938 Query 117454 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491 ||| || ||||| | |||||||||| ||| || || Sbjct 797937 CATCGCACCGCCCACTCTGCCTTCTTCTGAATGCACGG 797900 >seq21 Length=2191012 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1188715 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1188656 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 1188655 CAGGTAGGAG 1188646 >seq18 Length=1454827 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 1231721 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 1231780 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 1231781 CAGGTAGGAG 1231790 >seq4 Length=741884 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 484814 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 484755 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 484754 CAGGTAGGAG 484745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589977422359920