Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq26 105 4e-18 seq21 104 2e-17 seq331 102 5e-17 seq20 102 5e-17 >seq26 Length=613868 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 365994 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 366053 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 366054 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 366113 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || |||| || || || || ||||| || |||||||| Sbjct 366114 TCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCCGTCAGCGTCTTCACG 366173 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 366174 AAGATCTGCAT 366184 >seq21 Length=2191012 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 977239 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 977298 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 977299 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 977358 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 977359 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 977418 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 977419 AAGATCTGCATA 977430 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 977467 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 977526 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 977527 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 977586 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 977587 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 977646 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 977647 AAGATCTGCATA 977658 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 977695 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 977754 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 977755 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 977814 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 977815 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 977874 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 977875 AAGATCTGCATA 977886 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 977923 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 977982 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 977983 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 978042 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 978043 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 978102 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 978103 AAGATCTGCATA 978114 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 978151 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 978210 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 978211 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 978270 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 978271 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 978330 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 978331 AAGATCTGCATA 978342 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 978379 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 978438 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 978439 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 978498 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 978499 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 978558 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 978559 AAGATCTGCATA 978570 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || || ||||| Sbjct 977011 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAG 977070 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 977071 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 977130 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 977131 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 977190 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 977191 AAGATCTGCATA 977202 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || || ||||| Sbjct 978607 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAG 978666 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 978667 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 978726 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 978727 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 978786 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 978787 AAGATCTGCATA 978798 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/195 (71%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || || ||||| Sbjct 978835 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAAG 978894 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 978895 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 978954 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC- 34969 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 978955 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 979014 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 979015 AAAGATCTGCATTTT 979029 >seq331 Length=20977 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 8107 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 8166 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 8167 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTC 8226 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | |||||| || || | | ||||| || || || || |||||||| Sbjct 8227 TCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCACG 8286 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 8287 AAGATCTGCAT 8297 >seq20 Length=1996037 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 1271155 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAG 1271214 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | |||||||| || |||||| || ||| Sbjct 1271215 ATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTC 1271274 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||||| || |||| || || || || || || || ||||||||| Sbjct 1271275 TCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCACA 1271334 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1271335 AAGATCTGCAT 1271345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631787935824