Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq24 192 1e-43 seq14 159 6e-34 seq92 147 4e-30 seq17 134 3e-26 >seq24 Length=2960390 Score = 192 bits (212), Expect = 1e-43 Identities = 522/790 (66%), Gaps = 17/790 (2%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| ||||| ||||| ||| ||| ||| || ||| | |||||| || || || Sbjct 299975 GGCGAGGTTGCACACCGCCGTCTCCTCCGGCGACGTGAACTCGACGATCTCGGTGCACAG 299916 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| |||||||||||| || |||| || || || ||||||| ||| |||||||| Sbjct 299915 GTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCTGTTGCACGCGTCCTT 299856 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 |||||| || ||||| |||| ||||| | ||| | | | || || | ||| | || Sbjct 299855 GTAGAGGATGAAGGGCACGCCTGTCTCGATCTGCGACTCGAGGATGGCGAACCACACCTC 299796 Query 221893 TCTGGCGCTC-ACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 ||| || | ||| | | | ||||||| || | | || ||||| Sbjct 299795 -CTGCGCCTGGAGGGTCTGCACGCCGCGGCCCTCGGCCTCGTAGCGCTCG---TAGAGGC 299740 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG-CGGGACACATCAGA 222010 || |||| ||| ||||| ||| || || || || || |||| | |||||| Sbjct 299739 GCTCGAACTCTTCGCCGTAGCAGTCGCTGAGCCCCGGGCAGGTGCTCGGGTC-CATCAGC 299681 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||| | | | | || || | || ||||||||||||||||| ||||||||| | Sbjct 299680 GTCCACTTCCCCTCGCTCTTCACACGCTTCATGAAGAGGTCCGGGACCCACAGCGCGTAG 299621 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 ||||| || | || ||||| || ||| |||| |||| | |||| || || || Sbjct 299620 AAGAGGTCGCGGGCACGCTGGTCATCCTTGCCGGTGTTGCGCTTCAGCAGCAGGAAGCCA 299561 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || ||||| |||||||||||||| || |||| ||| | ||||| ||||| ||| Sbjct 299560 AAGATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCGCTTACCGCCG 299501 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| ||||| | || |||||| | ||| || |||| |||| ||||| Sbjct 299500 CCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAACCCGTTC 299441 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT----ACTGGCAGA 222306 || ||||| ||||| ||||| || |||| | | ||| || |||| Sbjct 299440 GACGTCCCGTTCGTGCCGGCGATGTAGCTGCCCGCGGCACGAATGTTGTGCACGTGCAG- 299382 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 |||||| ||||| || ||| ||||| |||||| ||| || ||||| ||| Sbjct 299381 ---GCCGATGCCACCAGCTGCTTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTAGAT 299325 Query 222367 GCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425 ||| || || ||||||||| |||| || || || || || |||||| | || | Sbjct 299324 GCCGTCGATGCTGTCCTCCTTCGACG-CCACGAGGAAGCACGAGCTCATCTGCGGCTTCG 299266 Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGAT 222485 | | |||||| || ||||| || ||||||| || ||| ||||| | ||||| || | Sbjct 299265 GCGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGGGTGAAGAAGCCCTTCGACATGAGGT 299206 Query 222486 CGTACGTCTC 222495 ||||||||| Sbjct 299205 TGTACGTCTC 299196 Score = 93.3 bits (102), Expect = 8e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 221110 GTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGT 221169 || |||||||||||| |||| || || || || | | ||| | ||| || || Sbjct 300563 GTACTTGTTCACCACAGGGAACTCGCCGCTCAGGACACGACGGACGTAGATGTTGGAGGT 300504 Query 221170 GAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGG 221229 ||| || |||| || ||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 300503 GAAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGACGTCGAGGCGGTTGGCATCGG 300444 Query 221230 TGCCACCAGCAGACTGTTGCGCAGTCCGA 221258 |||| |||||| |||||||| |||| Sbjct 300443 CGCCAGCAGCAGGGAGTTGCGCATGCCGA 300415 >seq14 Length=1309914 Score = 159 bits (176), Expect = 6e-34 Identities = 525/808 (65%), Gaps = 19/808 (2%) Strand=Plus/Plus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAG 25581 || ||||| ||||| | ||| |||||| | | ||||| || || | | | ||||| | Sbjct 797612 GAGGAGATCGATCTTGGCAACGACATGAAGGACTGGTTGGCGCTGAACGACGGCGAGCGG 797671 Query 25582 CATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAAT 25641 || || ||||| ||||| | || ||||| || | | || || || |||| |||||| Sbjct 797672 CACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTGATCGAGAAC 797731 Query 25642 CTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT-TTCTACGGTTT 25700 || || | |||| || || ||| || |||||| ||| |||||||| || Sbjct 797732 CTCGCTCAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGC-GTGCGTTCTACGGATT 797790 Query 25701 CCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACAT 25760 |||| || || || || | ||||| ||| ||| | ||| ||| |||||||| Sbjct 797791 CCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTACAT 797850 Query 25761 TACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCA 25819 || ||| || |||| || | || ||| | || || || || || |||| Sbjct 797851 CACGGACAGCGAGGAGA-AGCTGCGTCTGCTGCACGCGATTCAGACGATCCCGTGCATTC 797909 Query 25820 AGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGC 25879 ||| |||||| |||||| || |||||| |||| || || | || |||| Sbjct 797910 AGAAGAAGGCAGAGTGGGCGGTGCGATGGATCGGCAGCGAG---GCGAGCTTCCAGGAGC 797966 Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATC 25938 ||||| | | |||||||| || ||||||||||| ||| ||| || || ||| || | Sbjct 797967 GGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTCTGC-GCGCTG 798025 Query 25939 TTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 |||||||| ||| || ||| ||||| |||||| ||| ||||||||| ||| Sbjct 798026 TTCTGGCTGAAGAAGCGTGGGCTGATGCCGGGGCTGACCTTCAGCAACGAGCTGATCTCG 798085 Query 25999 AGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCAC 26058 | |||||||| || |||| || || || |||||||| |||| ||| | ||| Sbjct 798086 CGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCAC 798145 Query 26059 AAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117 || | || | ||| ||| || || |||||| || || ||| | |||||| || Sbjct 798146 AAGCTGTCGCGCGAGCGCGTGCTGGAG-ATCATCGTGGACGCGGTGAACATCGAGCGCGA 798204 Query 26118 GTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCA 26177 |||| | ||||||||| | || ||| || Sbjct 798205 GTTTATCTGCGACGCGCTGCCGGTGCGGCTGATTGGCATGAACTCCGAGCTGATGGCGCA 798264 Query 26178 ATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACA 26236 ||||| |||| ||||| |||| |||| |||| | |||||| | | | | ||||| Sbjct 798265 GTACATCGAGTTCGTGGCGGACCGCCTGCTTGTGTC-GCTGGGGTTGGAGAAGCACTACA 798323 Query 26237 --GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACT 26293 || |||| | || |||||||| ||||| | || ||| || | || ||||| |||| Sbjct 798324 ACGTGACGC---AGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACGAACT 798380 Query 26294 TCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||| |||| ||| ||||| || || Sbjct 798381 TCTTTGAGAAGAAGGTGGGCGAGTACCA 798408 >seq92 Length=13896 Score = 147 bits (162), Expect = 4e-30 Identities = 529/812 (65%), Gaps = 27/812 (3%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || || | ||| |||||| | | |||| | ||| | | | | ||||| Sbjct 3672 GAGGAGATCGACCTTGGCAACGACATGAAGGACTGGGTGAGGCTGAA--CGACGGCGAGC 3615 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| | || ||||| || | | || || || |||| ||||| Sbjct 3614 GGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTGATCGAGA 3555 Query 25640 ATCTGTGC-GAGAGATTCACCAGGGAAGTGCA-GTACGTGGAGGC-CAAGTGTTTCTACG 25696 | || ||| ||| | |||| || || ||| | || | |||||| | | |||| |||| Sbjct 3554 ACCT-TGCAGAGCGCTTCATGAGCGACGTGAAAGTGCC-GGAGGCGCGTGCGTTT-TACG 3498 Query 25697 GTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGT 25756 | |||||| || || || || | ||||| ||| ||| | ||| ||| |||| Sbjct 3497 GCTTCCAGCTGATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGT 3438 Query 25757 ACATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGC 25815 |||| || ||| || |||| |||| || ||| | || ||| || || || || Sbjct 3437 ACATCACGGACAGCGAGGAGA-AGATGCGTCTGCTGCACGCGATCCAGACGATCCCGTGC 3379 Query 25816 ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGC 25875 || ||| |||||| |||||| || |||||| |||| || || | || Sbjct 3378 ATTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGCAGCGAG---GCGAGCTTCCAG 3322 Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGC 25934 ||||||||| | | |||||||| || ||||||||||| ||| ||| || || ||| || Sbjct 3321 GAGCGGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTCTGC-GC 3263 Query 25935 CATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCAT 25994 | |||||||| ||| || ||| ||||| |||||| ||| ||||||||| || Sbjct 3262 GCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACCTTCAGCAACGAGCTGAT 3203 Query 25995 CAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCT 26054 | | |||||||| || |||| || || || |||||||| |||| ||| | Sbjct 3202 CTCGCGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAA 3143 Query 26055 CCACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 ||||| | || | ||| ||| || || ||||| || || ||| | |||||| Sbjct 3142 GCACAAGCTGTCGCGCGAGCGCGTGCTGGAG-ATCATTCTGGACGCGGTGAACATCGAGC 3084 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 ||||| | ||||||||| | || ||| Sbjct 3083 GCGAGTTCATCTGCGACGCGTTGCCGGTGCGGCTGATCGGCATGAACGCCGAGCTGATGG 3024 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTC 26232 || |||||||||| ||||| |||| |||| |||| | ||| || | | | | | Sbjct 3023 CGCAGTACATTGAGTTCGTGGCGGACCGCCTGCTTGTGTC-GCTCGGTTTGGAGAAGCAC 2965 Query 26233 TACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 |||| || |||| | || |||||||| ||||| | || ||| | | || ||||| Sbjct 2964 TACAACGTGACGC---AGCCCTTCGACTTCATGGAGATGATCTCGCTCCAGGGCAAGACG 2908 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || |||| ||| ||||| ||||| Sbjct 2907 AACTTCTTCGAGAAGAAGGTGGGCGAGTATCA 2876 >seq17 Length=1449266 Score = 134 bits (148), Expect = 3e-26 Identities = 524/811 (65%), Gaps = 25/811 (3%) Strand=Plus/Minus Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT--ACGCTCTATCCAAAGACGAGC 25579 || ||||| || || | ||| |||||| | | |||| | ||| | | | | ||||| Sbjct 520876 GAGGAGATCGACCTTGGCAACGACATGAAGGACTGGGTGAGGCTGAA--CGACGGCGAGC 520819 Query 25580 AGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGA 25639 ||| || ||||| ||||| | || ||||| || | | || || || |||| ||||| Sbjct 520818 GGCACTTCATCAAGCACGTGCTCGCCTTCTTCGCCGGCAGCGACGGCATCGTGATCGAGA 520759 Query 25640 ATCTGTGC-GAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGG 25697 | || ||| ||| | |||| || || ||| || |||||| | | |||| ||||| Sbjct 520758 ACCT-TGCAGAGCGCTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGTGCGTTT-TACGG 520701 Query 25698 TTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTA 25757 |||||| | || || || | ||||| ||| ||| | ||| ||| ||||| Sbjct 520700 CTTCCAGCTCATGATGGAGAACATCCACTCGGAGACGTACTCGGTGCTGCTGGACACGTA 520641 Query 25758 CATTACAGACGTCGCCGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816 ||| || ||| || |||| |||| ||| || | || ||| || || || ||| Sbjct 520640 CATCACGGACAGCGAGGAGA-AGATGCGGTTGCTGCACGCGATCCAGACAATCCCGTGCA 520582 Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876 | ||| |||||| |||||| || |||||| |||| || || | || | Sbjct 520581 TTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGCAGCGAG---GCGAGCTTCCAGG 520525 Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCC 25935 |||| ||| | | || ||||| || ||||||||||| ||| ||| || || ||| || Sbjct 520524 AGCGCCTGATCGGGTTCGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTCTGC-GCG 520466 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 | |||||||| ||| || ||| ||||| |||||| ||| ||||||||| ||| Sbjct 520465 CTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTGACCTTCAGCAACGAGCTGATC 520406 Query 25996 AGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTC 26055 | |||||||| || |||| || || || |||||||| |||| ||| | Sbjct 520405 TCGCGCGACGAGGGCCTGCACACGGACTTCGCGTGCCTGCTGTACAACTCGCACATCAAG 520346 Query 26056 CACAAACCTTCTCAAGAGACCGT-CTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAA 26114 ||||| | || | ||| ||| || || ||||| || || ||| | |||||| Sbjct 520345 CACAAGCTGTCGCGCGAGCGCGTGCTGGAG-ATCATTCTGGACGCGGTGAACATCGAGCG 520287 Query 26115 GGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAG 26174 ||||| | ||||||||| | || ||| Sbjct 520286 CGAGTTCATCTGCGACGCGTTGCCGGTGCGGCTGATCGGCATGAACGCCGAGCTGATGGC 520227 Query 26175 CCAATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCT 26233 || ||||| |||| ||||| |||| |||| |||| | ||| || | | | || || Sbjct 520226 GCAGTACATCGAGTTCGTGGCGGACCGCCTGCTTGTGTC-GCTCGGTTTGGAGAAACACT 520168 Query 26234 ACA--GT-ACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290 ||| || |||| | || |||||||| ||||| | || ||| || | || ||||| | Sbjct 520167 ACAACGTGACGC---AGCCCTTCGACTTCATGGAGATGATCTCGCTGCAGGGCAAGACAA 520111 Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||| || |||| ||| ||||| || || Sbjct 520110 ACTTCTTCGAGAAGAAGGTGGGCGAGTACCA 520080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839482363520