Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 2e-13 seq92 89.7 6e-13 seq14 89.7 6e-13 >seq17 Length=1449266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/254 (68%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 64975 GAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAA 65034 || |||| || ||| | | || ||||| || | || || ||| |||||||||| | Sbjct 520624 GAGAAGATGCGGTTGCTGCACGCGATCCAGACAATCCCGTGCATTCAGAAGAAGGCAGAG 520565 Query 65035 TGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTT 65094 ||||| || ||| | | || || | ||| || |||||||| | | ||| Sbjct 520564 TGGGCGGTGCGTTGGATCGGCAGCGAGGCGAGCT---TCCAGGAGCGCCTGATCGGGTTC 520508 Query 65095 GCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAG 65154 || || ||||| ||||||||||||||||| |||||||| | | ||| |||||||| Sbjct 520507 GCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTCTGCGCGCTGTTCTGGCTGAAGAAG 520448 Query 65155 CGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTC 65214 || || || ||||| || || |||| || || || || || || || ||||| || Sbjct 520447 CGCGGGCTGATGCCGGGGCTGACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTG 520388 Query 65215 CACCAGGAGTTTGC 65228 ||| ||| || || Sbjct 520387 CACACGGACTTCGC 520374 >seq92 Length=13896 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||||| || | || || ||| |||||||||| | ||||| || ||| | | | Sbjct 3399 GCGATCCAGACGATCCCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGTTGGATCGGC 3340 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 | || | ||| || ||||| || | | |||||| || ||||| |||||| Sbjct 3339 AGCGAGGCGAGCT---TCCAGGAGCGGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTC 3283 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 ||||||||||| |||||||| | | ||| |||||||||| || || ||||| || || Sbjct 3282 TTCTCCGGGTCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGGCTGATGCCGGGGCTG 3223 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 |||| || || || || || || || ||||| || ||| ||| || || Sbjct 3222 ACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGACTTCGC 3170 >seq14 Length=1309914 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC 65070 || || ||| |||||||||| | ||||| || |||| | | || || | ||| Sbjct 797900 CCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCGATGGATCGGCAGCGAGGCGAGCT-- 797957 Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 || ||||| || | | |||||| || ||||| ||||||||||||||||| ||| Sbjct 797958 -TCCAGGAGCGGCTGATCGGGTTTGCTGCCGTCGAGGGCATCTTCTTCTCCGGGTCCTTC 798016 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||||| | | ||| |||||||||| || || ||||| || || |||| || || Sbjct 798017 TGCGCGCTGTTCTGGCTGAAGAAGCGTGGGCTGATGCCGGGGCTGACCTTCAGCAACGAG 798076 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || || || ||||| || ||| ||| || || Sbjct 798077 CTGATCTCGCGCGACGAGGGCCTGCACACGGACTTCGC 798114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566184639040