Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq331 114 1e-20 seq20 111 1e-19 seq21 107 2e-18 seq26 105 6e-18 >seq331 Length=20977 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || || |||| || || || ||| Sbjct 8300 ACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCC 8241 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 8240 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 8181 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||||||||| || ||||||||||| | | | | || || Sbjct 8180 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 8121 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| | ||| |||| ||||||| ||| Sbjct 8120 AACATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGC 8070 >seq20 Length=1996037 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || ||||| ||||| || || || | ||||| || || || Sbjct 1271348 ACCATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCG 1271289 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| || || || || || || || || Sbjct 1271288 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGAC 1271229 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||||||||| || ||||||||||| | | | | || || Sbjct 1271228 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 1271169 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| | ||| |||| ||||||| ||| Sbjct 1271168 AACATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGC 1271118 >seq21 Length=2191012 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || |||| | Sbjct 977429 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977370 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 977369 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977310 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||||||| | | | | || || ||| Sbjct 977309 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977250 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || ||||||| || Sbjct 977249 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 977203 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || |||| | Sbjct 977657 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977598 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 977597 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977538 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||||||| | | | | || || ||| Sbjct 977537 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977478 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || ||||||| || Sbjct 977477 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 977431 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || |||| | Sbjct 977885 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977826 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 977825 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977766 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||||||| | | | | || || ||| Sbjct 977765 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977706 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || ||||||| || Sbjct 977705 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 977659 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || |||| | Sbjct 978113 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978054 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 978053 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977994 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||||||| | | | | || || ||| Sbjct 977993 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977934 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || ||||||| || Sbjct 977933 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 977887 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || |||| | Sbjct 978341 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978282 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 978281 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 978222 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||||||| | | | | || || ||| Sbjct 978221 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 978162 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || ||||||| || Sbjct 978161 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 978115 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || |||| | Sbjct 978569 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978510 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 978509 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 978450 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||||| || ||||||||||| | | | | || || ||| Sbjct 978449 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 978390 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || ||||||| || Sbjct 978389 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 978343 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || |||| | Sbjct 977201 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977142 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 977141 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977082 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||||||||| | | | | || || ||| Sbjct 977081 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977022 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || ||||||| || Sbjct 977021 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 976975 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| ||||| || || || |||| || || || |||| | Sbjct 978797 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978738 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 978737 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 978678 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||| || || ||||||||||| | | | | || || ||| Sbjct 978677 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 978618 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || ||||||| || Sbjct 978617 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 978571 Score = 102 bits (112), Expect = 7e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAA-ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || ||||| ||||| || || || |||| || || || |||| Sbjct 979026 ATGCAGATCTTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAG 978967 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 978966 CGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 978907 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||||| || || ||||||||||| | | | | || || || Sbjct 978906 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAA 978847 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| | ||| | || ||||||| || Sbjct 978846 CATCCAGAAGGAGTCCACGCTGCACCTCGTGCTTCGCCTGCGCGGCGG 978799 >seq26 Length=613868 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| || || || || || | ||||| || || || Sbjct 366187 ACCATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCCCTCGAGGTCGAGGCG 366128 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 366127 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 366068 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||||||||| || ||||||||||| | | | | || || Sbjct 366067 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 366008 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| | ||| |||| ||||||| ||| Sbjct 366007 AACATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGGC 365957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895024336240