Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq122 91.5 1e-13 seq5 91.5 1e-13 >seq122 Length=63603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 43880 GCCGTCGAGGGCGGCCACGATGACGATCTTCCCCGCGTTCGCCATGTCCTCGCAGAACTC 43939 ||||||||| |||| ||| || |||||||||||||||| || | | |||||| || Sbjct 46904 GCCGTCGAGCGCGGACACCATCACGATCTTCCCCGCGTCGGCTGCGGTGTTGCAGAAGTC 46963 Query 43940 CACTAGGTCGATGAAGAACTGGCCCTCGTCGATGCCCACCACGTC 43984 ||| |||||| |||| ||||| ||||||||||| | | |||||| Sbjct 46964 CACCAGGTCGCTGAAAAACTGCCCCTCGTCGATCGCGAGCACGTC 47008 >seq5 Length=761260 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 43880 GCCGTCGAGGGCGGCCACGATGACGATCTTCCCCGCGTTCGCCATGTCCTCGCAGAACTC 43939 ||||||||| |||| ||| || |||||||||||||||| || | | |||||| || Sbjct 487397 GCCGTCGAGCGCGGACACCATCACGATCTTCCCCGCGTCGGCTGCGGTGTTGCAGAAGTC 487456 Query 43940 CACTAGGTCGATGAAGAACTGGCCCTCGTCGATGCCCACCACGTC 43984 ||| |||||| |||| ||||| ||||||||||| | | |||||| Sbjct 487457 CACCAGGTCGCTGAAAAACTGCCCCTCGTCGATCGCGAGCACGTC 487501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476038874661840