Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq20 95.1 1e-14 seq331 86.0 5e-12 seq26 86.0 5e-12 seq21 86.0 5e-12 >seq20 Length=1996037 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| || || || |||| ||||| || Sbjct 1271345 ATGCAGATCTTTGTGAAGACGCTGACCGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 1271286 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| ||||| || ||| | ||| ||| ||| Sbjct 1271285 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAG 1271226 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 1271225 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 1271166 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| ||| ||||| | ||| || | |||| || || Sbjct 1271165 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 1271119 >seq331 Length=20977 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 8297 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 8238 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 8237 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 8178 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 8177 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 8118 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| ||| ||||| | ||| || | |||| || || Sbjct 8117 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 8071 >seq26 Length=613868 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| || || || |||| ||||| || Sbjct 366184 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCGCCCTCGAGGTCGAGGCGAGC 366125 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 366124 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 366065 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 366064 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 366005 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| ||| ||||| | ||| || | |||| || || Sbjct 366004 ATCCAGAAGGAGTCCACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 365958 >seq21 Length=2191012 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTT-GTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGC 107611 |||||||| || ||| || || || | || ||||| ||||| | | || |||||| Sbjct 979029 AAAATGCAGATCTTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGC 978970 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 |||| || ||| | || || ||||| || || || ||| | ||| ||| Sbjct 978969 CAGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 978910 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTA 107731 |||||| | || || | ||| || || ||||||||||| | | || | |||||||| Sbjct 978909 CCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTA 978850 Query 107732 CAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| || |||||||| ||| ||||| | ||| Sbjct 978849 CAACATCCAGAAGGAGTCCACGCTGCACCTCGTG 978816 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 977201 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977142 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 977141 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977082 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 977081 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977022 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| | ||| Sbjct 977021 ATCCAGAAGGAGTCCACGCTGCACCTCGTG 976992 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 977429 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977370 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 977369 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977310 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 977309 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977250 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| | ||| Sbjct 977249 ATCCAGAAGGAGTCCACGCTGCACCTCGTG 977220 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 977657 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977598 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 977597 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977538 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 977537 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977478 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| | ||| Sbjct 977477 ATCCAGAAGGAGTCCACGCTGCACCTCGTG 977448 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 977885 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 977826 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 977825 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977766 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 977765 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977706 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| | ||| Sbjct 977705 ATCCAGAAGGAGTCCACGCTGCACCTCGTG 977676 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 978113 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978054 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 978053 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 977994 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 977993 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 977934 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| | ||| Sbjct 977933 ATCCAGAAGGAGTCCACGCTGCACCTCGTG 977904 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 978341 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978282 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 978281 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 978222 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 978221 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 978162 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| | ||| Sbjct 978161 ATCCAGAAGGAGTCCACGCTGCACCTCGTG 978132 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 978569 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978510 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 978509 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 978450 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 978449 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 978390 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| | ||| Sbjct 978389 ATCCAGAAGGAGTCCACGCTGCACCTCGTG 978360 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| | | || |||||| || Sbjct 978797 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCGCGCTGGAGGTGGAGGCCAGC 978738 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| ||| ||| Sbjct 978737 GACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 978678 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 978677 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTACAAC 978618 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| ||| ||||| | ||| Sbjct 978617 ATCCAGAAGGAGTCCACGCTGCACCTCGTG 978588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398874573519562