Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq14 87.8 2e-12 seq24 82.4 7e-11 >seq14 Length=1309914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 240/360 (67%), Gaps = 6/360 (2%) Strand=Plus/Plus Query 50370 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCACACAGAC 50429 ||||| || || || || ||||||||| |||| ||||||||||| || ||||||| ||| Sbjct 798050 ATGCCGGGGCTGACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 798109 Query 50430 TTTGCGTGTTTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAACAATTTTG 50489 || ||||| || ||||| ||| | | || | || | || ||| | || Sbjct 798110 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGTCGCGCGAGCGCGTGCTG 798169 Query 50490 GACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTG 50549 || || || || || || ||||||| |||||| || ||||| | || ||| Sbjct 798170 GAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTTATCTGCGACGCGCTGCCGGTG 798229 Query 50550 GCATTGTTGGGCATGAACGCAGACATGATGTGCG-AGTACATTGAGTTTGTTGCAGACAG 50608 || | ||||||||| | || ||||| ||| ||||||| ||||| || || ||| | Sbjct 798230 CGGCTGATTGGCATGAACTCCGAGCTGATG-GCGCAGTACATCGAGTTCGTGGCGGACCG 798288 Query 50609 ATTGTTGTTGCAGCTGGGACAACCGAAATACTATAATG-CACGTAACCCCTTTCCGTTTA 50667 || | || |||||| ||| |||| || | ||| | ||||| || | Sbjct 798289 CCTGCTTGTGTCGCTGGGGTTGGAGAAGCACTACAACGTGACG-CAGCCCTTCGACTTCA 798347 Query 50668 TGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA-AAGACGTGTAGGCGAATAC 50726 || | | || ||| || ||||||| || ||||| || || |||| | || ||||| ||| Sbjct 798348 TGGAGATGATCTCGCTGCAGGGCAAGACGAACTTCTTTGAGAAGAAG-GTGGGCGAGTAC 798406 >seq24 Length=2960390 Score = 82.4 bits (90), Expect = 7e-11 Identities = 221/332 (67%), Gaps = 7/332 (2%) Strand=Plus/Minus Query 151709 ATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGCTT---GCCACCT 151765 |||||| |||||||| |||| ||| | || |||||| || ||||| ||| || Sbjct 299557 ATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCGCCCTTGCGCTTACCGCCGCCC 299498 Query 151766 TGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCG 151825 || ||||||| || || | || || || || |||||||| || | || ||| | | Sbjct 299497 TGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGCATCGGCACCAACCCGTTCGAC 299438 Query 151826 GTGCCGTTCGTAGATTTTATTTTGCTGTT-GCGGCCGCGTACGCTGTTCACGTTCAATCC 151884 || |||||||| || | |||| ||||| || | | ||| ||||| || || Sbjct 299437 GTCCCGTTCGTGCCGGCGATGTAGCTGCCCGCGGCA-CGAATGTTGTGCACGTGCAGGCC 299379 Query 151885 AATACCGCCGCCGTGTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCG 151944 || || || | ||| ||||| |||||| || || | |||| ||||||||| Sbjct 299378 GATGCCACCAGCTGCTTTGCTGATCACGGCGCACTCCTTCAGCGTGTCGTAGATGCCGTC 299319 Query 151945 AATGCTATCG-CTTTCCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGC 152003 ||||| || | ||| | | || || || || || ||||||||||| || | |||| Sbjct 299318 GATGCTGTCCTCCTTCGACGC-CACGAGGAAGCACGAGCTCATCTGCGGCTTCGGCGTGC 299260 Query 152004 CGGCAGCGAACATGGTTGGGCTTGCGTGCGTG 152035 |||| ||| | || || | ||||| ||| Sbjct 299259 CGGCGTTGAAGAGCGTCGGCGTGGCGTGGGTG 299228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488541203085600