Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq24 306 4e-78 seq92 113 4e-20 seq17 107 2e-18 seq14 98.7 9e-16 >seq24 Length=2960390 Score = 306 bits (338), Expect = 4e-78 Identities = 963/1455 (66%), Gaps = 49/1455 (3%) Strand=Plus/Minus Query 146866 TTAATGAGGTC-ATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACG 146924 || |||||||| |||| | |||| || ||||| | |||||||| ||| ||||| Sbjct 300583 TTGATGAGGTCCATCACG-AGGTACTTGTTCACCACAGGGAACTCGCCGCTCAGGACACG 300525 Query 146925 TCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGC 146984 | || || | ||| ||||| ||||| || |||| || ||||| | || || | Sbjct 300524 ACGGACGTAGATGTTGGAGGTGAAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGA 300465 Query 146985 CGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGA 147043 ||| | ||||| ||||| ||||| || || || || |||| ||| | ||| | Sbjct 300464 CGTCGAGGCGGTTGGCATCGGCGCCAGCAGCAGGGAGTTGCGCATGCCGACCTGCATC-A 300406 Query 147044 TGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAG---GGCGTCACGTTC---CACA 147097 || ||||||| | | |||||||||| | | ||| | ||||| |||| Sbjct 300405 CCTTCTCCTTCAGGCTGTCCCAGTCCCACCGCCCGCTGTTCGGCCGCGCGTTCTTCCACA 300346 Query 147098 TGTCGTACTGGAGCACTCC-TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCG 147156 ||||| ||||||| | || ||| || || || ||||| ||| || |||| || Sbjct 300345 TGTCGAACTGGAGAATGCCCTCG-CTCGCCGGGCTGCCCTTGAAGGTCTCGTAGGGGCCT 300287 Query 147157 TCGCGCTGCGCCAATTCACAGCTT-GCCTCGAGCGCTCCATAGTATATGGTTTCGGCGAT 147215 || || ||| | || || | ||||||| ||| | |||| || || ||| || Sbjct 300286 TCCTCCTTCGCTATCTC-CATCGACGCCTCGACCGCCGCGAAGTAGATCGTCTCGAAAAT 300228 Query 147216 TTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGC 147275 | ||| | ||| || | || || | |||| || || || | ||||| Sbjct 300227 CTCCGAGTTCACCTTCTGCGCCTCGGCACTGACGAAGGGCAGGCGGAGCAGAATGAAGGC 300168 Query 147276 ATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGAT-GCTTTTCGTTGCTGCGCTTCG 147334 |||||||||||||| | |||| ||||| || || | || | |||||||||| || Sbjct 300167 GTCGGCCAAACCCTGCACGCCGAGGCCGACCGGGCGGTTGCGCAT-GTTGCTGCGCCGCG 300109 Query 147335 CGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTT 147394 | || | | || |||| |||||||||||| | ||||||||| || | | Sbjct 300108 CCGTCTCGACCGGGTAGTAGTTGCGATCAATGACACGGTTGAGGTTGCGGGTGATCTGCT 300049 Query 147395 TAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGT--ACGCATTG 147452 | || | || | ||| || | || || || || |||| | ||| ||| | | Sbjct 300048 TCGTGACGGTGTAGAGCAGCTGGTGGTCG-AACTCGCG-CTTCTCCTCGTTGACGAAGCG 299991 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCA 147511 || ||||| || || || ||||| || |||||||| || |||| || || ||| | Sbjct 299990 CGGCAACGCGATGGAGGCGAGGTTGCACACCGCCGTCTCCTCCGGCGACG-TGAACTCGA 299932 Query 147512 CGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCC 147571 |||| |||| ||||||||| ||| || ||| || | || | ||| || || | Sbjct 299931 CGATCTCGGTGCACAGGTTCGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGC 299872 Query 147572 GATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGA 147631 ||||||||||| ||| |||| ||| | || |||| ||||||| |||| || | || Sbjct 299871 TGTTGCACGCGTCCTTGTAGAGGATGAAGGGCACGCCTGTCTCGATCTGCGACTCGAGGA 299812 Query 147632 TA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGT 147688 | |||| || |||||||| | | |||| |||||||||| |||| Sbjct 299811 TGGCGAACCA---CACCTCCTGCGCCTGGAGGGTCTGCACGCCGCGGCCCTCGGCCTCGT 299755 Query 147689 ACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGA 147747 | |||||||| | ||||| ||||| ||||||||||| ||| || || || || || Sbjct 299754 AGCGCTCGTAGAGGCGCTCGAACTCTTCGCCGTAGCAGTCGCTGAGCCCCGGGCAGGTGC 299695 Query 147748 TGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGC 147807 | || | |||||||| |||| | | || || || || ||| || || ||||| Sbjct 299694 TCGGGTC-CATCAGCGTCCACTTCCCCTCGCTCTTCACACGCTTCATGAAGAGGTCCGGG 299636 Query 147808 ACCCACAGCGCGTACATAAGATCGCGCGCT---TTGCAATCCTCGGCGCCCATGTTGCGT 147864 |||||||||||||| | || ||||| || | | ||||| | || ||||||| Sbjct 299635 ACCCACAGCGCGTAGAAGAGGTCGCGGGCACGCTGGTCATCCTTGCCGG---TGTTGCGC 299579 Query 147865 TTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCA 147924 |||| || | || | |||||||||||||||| || |||| ||||| ||| | || Sbjct 299578 TTCAGCAGCAGGAAGCCAAAGATGTCGGCGTGCCACGGCTCAAGGTAGATGGCGAAGGCG 299519 Query 147925 CCTTTACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACC 147981 || || ||||| ||||| |||||| || | ||| || ||||||| |||||||||| | Sbjct 299518 CCCTTGCGCTTACCGCCGCCCTGGTCCACGTAGCGGGCCGTGTTGTTGAACACGCGCAGC 299459 Query 147982 ATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGC 148041 || || ||| ||| ||| || ||||| ||| ||| | |||||| ||| || Sbjct 299458 ATCGGCACCAACCCGTTCGACGTCCCGTTCGTGCCGGCGATGTAGCTGCCCGCGGCACGA 299399 Query 148042 ACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGAT-ATGGCAGCGCAATCGCC 148100 | | |||||||| | ||| ||||| || | | ||||| | || | ||||| || Sbjct 299398 ATGTTGTGCACGTGCAGGCCGATGCCACCAGC-TGCTTTGCTGATCACGGCGCACTCCTT 299340 Query 148101 CAATGTCGTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAAC 148159 || || ||||||||||||||||||||| | || ||||||| | | || ||||| | Sbjct 299339 CAGCGTGTCGTAGATGCCGTCGATGCTGTCCTCCTTCGACGCCACG-AGGAAGCACGAGC 299281 Query 148160 ACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA-- 148217 ||| ||||| || |||| || || ||| || || || | ||||| || || || Sbjct 299280 TCATCTGCGGCTTCGGCGTGCCGGCGTTGAAGAGCGTCGGCGTGGCGTGGGTGAAGAAGC 299221 Query 148218 TTTTTGACTCATCATGCGATACGTCTCAATAGCG-TCTTCGATGTCGTCGCCGTGAATGC 148276 || || ||| | | |||||||| || ||||| | |||| || |||| |||| Sbjct 299220 CCTTCGA--CATGAGGTTGTACGTCTCGCGGACGTTCTTC-AGGTCGCCGACGTGGATGC 299164 Query 148277 CCAGCGCGACGCGCA 148291 | || || || |||| Sbjct 299163 CGAGAGCAACACGCA 299149 >seq92 Length=13896 Score = 113 bits (124), Expect = 4e-20 Identities = 250/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 |||||||| ||||| ||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 3234 ATGCCGGGGCTGACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 3175 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 3174 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGTCGCGCGAGCGCG-TGCT 3116 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || || ||| ||||||| |||||| ||||| | ||||| ||| |||| Sbjct 3115 GGAGATCATTCTGGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGTTGCCG 3058 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||||| || ||| ||| | || |||||||| ||||||| Sbjct 3057 GTGCGGC-TGATCGGCATGAACGCCGAGCTGATG-GCGCAGTACATTGAGTTCGTGGCGG 3000 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | ||| |||||| ||| | | || | | || || || | Sbjct 2999 ACCGCCTGCTTGTGTCGCTCGGTTTGGAGAAGCACTACAACGTGACGCAGCCCTTCGACT 2940 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || |||||| ||||||| || || || |||||||| || || |||| Sbjct 2939 TCATGGAGATGATCTCGCTCCAGGGCAAGACGAACTTCTTCGAGAAGAAGGTGGGCGAGT 2880 Query 47269 ATAAG 47273 || || Sbjct 2879 ATCAG 2875 >seq17 Length=1449266 Score = 107 bits (118), Expect = 2e-18 Identities = 351/527 (67%), Gaps = 19/527 (4%) Strand=Plus/Minus Query 46736 GTTGCTGAATGCGTTCGAGCACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAA 46795 ||||||| | ||| || || | || ||| ||| || ||||| ||||||| || Sbjct 520613 GTTGCTGCACGCGATCCAGACAATCCCGTGCATTCAGAAGAAGGCAGAGTGGGCGGTGCG 520554 Query 46796 GTGGATCGAGAGCGAGACCGCCACGCTGGCCG-AGCGCATGGTGGCATTCGCGATAGTCG 46854 ||||||| |||||| || | ||| | | ||||| || | | ||||| |||| Sbjct 520553 TTGGATCGGCAGCGAG---GCGA-GCTTCCAGGAGCGCCTGATCGGGTTCGCTGCCGTCG 520498 Query 46855 AAGGCGTGtttttttC-GGGCAGTTTTGCCGCCATTTTTTACATTAA-AACCAAAGGCAT 46912 | ||| | || || || ||| || ||| || | || | | || || | ||| | Sbjct 520497 AGGGCATCTTCTTCTCCGGGTCCTTCTGC-GCGCTGTTCTGGCTGAAGAAGCGCGGGC-T 520440 Query 46913 AATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGA 46972 |||||||| ||||| ||||| |||||| |||||||||||||||| || || |||||||| Sbjct 520439 GATGCCGGGGCTGACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGA 520380 Query 46973 CTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCC 47031 ||| ||||| || ||||| ||| | | || | || | | || | || | | Sbjct 520379 CTTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGTCGCGCGAGCGCG-TGC 520321 Query 47032 TGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCC 47089 || || || ||| ||||||| |||||| ||||| | ||||| ||| |||| Sbjct 520320 TGGAGATCATTCTGGACGCGGTGAACATCGAGCGCGAGTTCAT--CTGCGACGCGTTGCC 520263 Query 47090 CGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCG 47147 || || | || | ||||||||||| || ||| ||| | || || ||||| |||||| Sbjct 520262 GGTGCGGC-TGATCGGCATGAACGCCGAGCTGATG-GCGCAGTACATCGAGTTCGTGGCG 520205 Query 47148 GATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAG 47207 || || ||| | ||| |||||| |||| | | || | | || || || Sbjct 520204 GACCGCCTGCTTGTGTCGCTCGGTTTGGAGAAACACTACAACGTGACGCAGCCCTTCGAC 520145 Query 47208 TTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 || ||| | | || ||||| ||||||| || || || |||||||| Sbjct 520144 TTCATGGAGATGATCTCGCTGCAGGGCAAGACAAACTTCTTCGAGAA 520098 >seq14 Length=1309914 Score = 98.7 bits (108), Expect = 9e-16 Identities = 185/262 (71%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 |||||||| ||||| ||||| |||||| |||||||||||||||| || || ||||||||| Sbjct 798050 ATGCCGGGGCTGACCTTCAGCAACGAGCTGATCTCGCGCGACGAGGGCCTGCACACGGAC 798109 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAA-ATTAAACTCGGACACGATCCT 47032 || ||||| || ||||| ||| | | || | || | | || | || | || Sbjct 798110 TTCGCGTGCCTGCTGTACAACTCGCACATCAAGCACAAGCTGTCGCGCGAGCGCG-TGCT 798168 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || | ||| ||||||| |||||| |||||| | ||||| |||||||| Sbjct 798169 GGAGATCATCGTGGACGCGGTGAACATCGAGCGCGAGTTTAT--CTGCGACGCGCTGCCG 798226 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 || || | || | ||||||||| | || ||| ||| | || || ||||| ||||||| Sbjct 798227 GTGCGGC-TGATTGGCATGAACTCCGAGCTGATG-GCGCAGTACATCGAGTTCGTGGCGG 798284 Query 47149 ATCGTCTGTTGGTGCAGCTCGG 47170 | || ||| | ||| ||| || Sbjct 798285 ACCGCCTGCTTGTGTCGCTGGG 798306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608471400880