Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crithidia_20fasciculata_20[genbank_20GCA_5F000331325.2_202015-08-20] 458 sequences; 41,297,378 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq21 138 1e-27 seq331 134 1e-26 seq26 134 1e-26 seq20 131 2e-25 >seq21 Length=2191012 Score = 138 bits (152), Expect = 1e-27 Identities = 150/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 978834 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAA 978893 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 978894 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 978953 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 978954 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 979013 Query 35725 -AAATATCTGCATTCTGT 35741 ||| ||||||||| ||| Sbjct 979014 GAAAGATCTGCATTTTGT 979031 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 977010 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAA 977069 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 977070 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 977129 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 977130 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 977189 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 977190 GAAGATCTGCAT 977201 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 977238 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 977297 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 977298 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 977357 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 977358 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 977417 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 977418 GAAGATCTGCAT 977429 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 977466 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 977525 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 977526 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 977585 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 977586 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 977645 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 977646 GAAGATCTGCAT 977657 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 977694 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 977753 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 977754 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 977813 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 977814 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 977873 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 977874 GAAGATCTGCAT 977885 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 977922 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 977981 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 977982 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 978041 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 978042 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 978101 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 978102 GAAGATCTGCAT 978113 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 978150 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 978209 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 978210 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 978269 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 978270 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 978329 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 978330 GAAGATCTGCAT 978341 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 978378 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 978437 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 978438 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 978497 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 978498 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 978557 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 978558 GAAGATCTGCAT 978569 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 978606 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCAAA 978665 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 978666 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 978725 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 978726 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 978785 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 978786 GAAGATCTGCAT 978797 >seq331 Length=20977 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 8106 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 8165 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 8166 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 8225 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| | |||||||||| || ||| || || || |||| || ||||| Sbjct 8226 CTCGATCGTGTCGCTGGCCTCCACCTCCAGCGCGATGGTCTTGCCGGTCAGCGTCTTCAC 8285 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 8286 GAAGATCTGCAT 8297 >seq26 Length=613868 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 365993 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 366052 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||||||| |||||| ||||| | Sbjct 366053 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 366112 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||||| || ||||| | | |||||| || ||||||| || ||||| Sbjct 366113 CTCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCCGTCAGCGTCTTCAC 366172 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 366173 GAAGATCTGCAT 366184 >seq20 Length=1996037 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || ||||||||||| || ||||| Sbjct 1271154 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAA 1271213 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| |||| || |||||| ||| |||||| ||||| | Sbjct 1271214 GATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTT 1271273 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||||| || ||||| | | |||||| || || |||| || ||||| Sbjct 1271274 CTCGATCGTGTCGCTCGCCTCGACCTCGAGGGCGATCGTCTTGCCGGTCAGCGTCTTCAC 1271333 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1271334 AAAGATCTGCAT 1271345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791019206640